624 Open source projects that are alternatives of or similar to Afterqc

MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.

A DSL for data-driven computational pipelines

Fast multi-line FASTA/Q reader in several programming languages

Sequana: a set of Snakemake NGS pipelines

Fast Reference-Guided Scaffolding of Genome Assembly Contigs. RagTag, the successor to RaGOO, is now available here: https://github.com/malonge/RagTag

1kb js library contains development debugging, error monitoring and reporting, user problem localization features - 1KB代码搞定开发调试发布，错误监控上报，用户问题定位

The sources of the openSNP website

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

FastQC port to Qt5: A quality control tool for high throughput sequence data.

✏️ A versatile DNA sequence optimizer

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Salentin et al. (2015), https://www.doi.org/10.1093/nar/gkv315

GCP Essentials for Bioinformatics Researchers

Cute Error Pages for your nginx web server

Race and ethnicity Imputation from Disease history with Deep LEarning

ECG classification programs based on ML/DL methods

Bioinformatics library for .NET

Package for fetching metadata and downloading data from SRA/ENA/GEO

🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results

Predicates for type checking, assertions, filtering etc

A robust and fast clustering method for amplicon-based studies

Code examples of fast and simple k-mer counters for tutorial purposes

MOLGENIS - for scientific data: management, exploration, integration and analysis.

Drop-in replacement for the standard library errors package and github.com/pkg/errors

Automatic panic monitoring for Go and Go web frameworks, like negroni, gin, and revel

A curated list of bioinformatics bench-marking papers and resources.

Single cell perturbation prediction

Polyrhythmic Sequencer library for Web Audio API.

a collection of small and standalone utilities for image processing, written in C

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

A curated list of awesome Bioinformatics libraries and software.

parallel fastq-dump wrapper

Application for making ENCODE Blacklists

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

Post-analysis of immune repertoire sequencing data

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

A lightweight, pure-Swift library for manage the task execution in different threads. Through the definition a simple but powerful concept, Kommand.

Syntax highlighting for computational biology

Bioconductor cheat sheet

A beautiful error page for Laravel apps

dna2vec: Consistent vector representations of variable-length k-mers

Bioinformatics Workbook repository

Conda recipes for the bioconda channel.

List of tools and resources related to the 10x Genomics GEMCode/Chromium system

SquiggleKit: A toolkit for manipulating nanopore signal data

APBS - software for biomolecular electrostatics and solvation

EDAM is an ontology of bioinformatics types of data including identifiers, data formats, operations and topics.

Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

A cool place to store your Hi-C

GO enrichment with python -- pandas meets networkx

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

dynamic regular expression print

An efficient FASTQ manipulation suite

Bayesian genotyper for structural variants

MyGene.info: A BioThings API for gene annotations

Bio4j abstract model and general entry point to the project

TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models

Biological sequences for the julia language