522 Open source projects that are alternatives of or similar to Apbs Pdb2pqr

A curated list of Cheminformatics libraries and software.

The Chemistry Development Kit

This library tackles the construction and efficient execution of computational chemistry workflows

Therapeutics Data Commons: Machine Learning Datasets and Tasks for Therapeutics

Demonstrating best practices for bioinformatics command line tools

Post-analysis of immune repertoire sequencing data

Quantum chemistry program executor and IO standardizer (QCSchema).

EDAM is an ontology of bioinformatics types of data including identifiers, data formats, operations and topics.

SortMeRNA: next-generation sequence filtering and alignment tool

GCP Essentials for Bioinformatics Researchers

Biological sequences for the julia language

A curated list of awesome Bioinformatics libraries and software.

Code for the paper: Benhenda, M. 2017. ChemGAN challenge for drug discovery: can AI reproduce natural chemical diversity? arXiv preprint arXiv:1708.08227.

Bioinformatics Workbook repository

Pegasus Workflow Management System - Automate, recover, and debug scientific computations.

List of tools and resources related to the 10x Genomics GEMCode/Chromium system

✏️ A versatile DNA sequence optimizer

Bayesian genotyper for structural variants

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

FastQC port to Qt5: A quality control tool for high throughput sequence data.

A fast whole-genome aligner based on de Bruijn graphs

Provides access to complex Bioinformatics software (even BioLinux!) in just one command.

Protein-Level ASSembler (PLASS): sensitive and precise protein assembler

A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)

Bioinformatics library for .NET

The START App: R Shiny Transcriptome Analysis Resource Tool

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

A Python library which allows construction and manipulation of complex molecules, as well as automatic molecular design and the creation of molecular databases.

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)

Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

Inference of ploidy and heterozygosity structure using whole genome sequencing data

Structural variant toolkit for VCFs

UGENE is free open-source cross-platform bioinformatics software

Conda recipes for the bioconda channel.

Antimicrobial Resistance Identification By Assembly

SquiggleKit: A toolkit for manipulating nanopore signal data

A Practical and Efficient NCBI Taxonomy Toolkit

GO enrichment with python -- pandas meets networkx

A DSL for data-driven computational pipelines

MyGene.info: A BioThings API for gene annotations

An efficient FASTQ manipulation suite

Molecule Validation and Standardization

Library for reading and writing chemistry files

An interactive web tool for quality control of DNA sequencing data

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

Orthogonal polynomials in all shapes and sizes.

Race and ethnicity Imputation from Disease history with Deep LEarning

Robust and efficient workflows using a simple language agnostic approach

Benchmarking programming languages/implementations for common tasks in Bioinformatics

Genomics Extension for SQLite

Flexible genotype query among 30,000+ samples whole-genome

Solutions to assignments of Coursera Specializations - Deep learning, Machine learning, Algorithms & Data Structures, Image Processing and Python For Everybody

😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎

A collection of scripts and notes related to genomics and bioinformatics

A robust and fast clustering method for amplicon-based studies

Global Biotic Interactions provides access to existing species interaction datasets

compacted de Bruijn graph construction in low memory

MOLGENIS - for scientific data: management, exploration, integration and analysis.

A cool place to store your Hi-C