66 Open source projects that are alternatives of or similar to artistoo

🧬 An R package for visualizing molecular data in 3D

This is the main repository for the HackBio'2020 Virtual Internship Experience ❤️

Generative design workshop (Clojure/ClojureScript)

A Lua toolkit for computational geometry on a grid

The Biochemical Algorithms Library

Cellular automata search program

Streamlining SLAM-seq analysis with ultra-high sensitivity

Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.

A prediction model for differential gene expression (DE) based on genome-wide regulatory interactions

A generic 2D cellular automaton simulator

Cellular Automata Simulator

STAPLE (Shared Tools for Automatic Personalised Lower Extremity modelling) consists of a collection of methods for generating skeletal models from three-dimensional bone geometries, usually segmented from medical images. The methods are currently being expanded to create complete musculoskeletal models.

The Mixed-Cell Cellullar Automata (MCCA) provides a new approach to enable more dynamic mixed landuse modeling to move away from the analysis of static patterns. One of the biggest advantages of mixed-cell CA models is the capability of simulating the quantitative and continuous changes of multiple landuse components inside cells.

[alpha!] [on hiatus] An advanced cellular-automaton-specification language that transpiles to Golly's.

A Curated List of Computational Biology Datasets Suitable for Machine Learning

CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

Free hands-on course with the implementation (in Python) and description of several computational, mathematical and statistical algorithms.

A Go package for engineering organisms.

Predict and analyze cellular automata using convolutional neural networks

pyQms, generalized, fast and accurate mass spectrometry data quantification

A Game of Life pattern searcher written in Rust. 用 Rust 搜索生命游戏中的图样。

Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on Computational Biology

A Language for the Pithy Articulation of Cellular Automata

A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.

Cellular Automata Environments for Reinforcement Learning

TerraME is a programming environment for spatial dynamical modelling

A COBRApy extension for genome-scale models of metabolism and expression (ME-models)

Syntax highlighting for computational biology

Conway's Game of Life using python's matplotlib and numpy

A simple command-line tool that generates gif images and animations from elementary cellular automata

(WIP) An interactive web app for exploring cellular automata.

Written in C++ and using SDL, The Powder Toy is a desktop version of the classic 'falling sand' physics sandbox, it simulates air pressure and velocity as well as heat.

2D Pixel Physics Simulator

GPU-accelerated engine for multi-dimensional cellular automata

The Microbiome Interpretable Temporal Rule Engine

Different algorithms and simulations from gravity simulations to cellular automata, implemented in python.

A library to build and execute typed scientific workflows

Collection of scripts for bacterial genomics

Fitness landscape exploration sandbox for biological sequence design.

A Generative Art Gallery with the idea of creating a virtual Art Gallery with my creations. I have tried my hands on creating some visually appealing art using Cellular Automata, Recursive Grammar, Phyllotaxis, Sandpiles, Perlin Noise, IFS, Tiling.

Clustering scRNAseq by genotypes

Spatial alignment of single cell transcriptomic data.

Predicting protein structure through sequence modeling

Multiplayer Conway's Game of Life (desktop app + server) implemented in Rust

DeepChem 2017: Deep Learning & NLP for Computational Chemistry, Biology & Nano-materials

A visual programming language, evaluated as a cellular automaton

Robust and scalable inference of cell lineages from gene expression data.

Evoplex is a fast, robust and extensible platform for developing agent-based models and multi-agent systems on networks. It's available for Windows, Linux and macOS.

screenlamp is a Python toolkit for hypothesis-driven virtual screening

Codes for HCA (Hierarchical Cellular Automata for Visual Saliency) accepted by IJCV 2018.

Myokit: A simple interface to cardiac cellular electrophysiology

Generate any a-by-( b + c ) finite rectangle SVG containing potentially Infinitely many a-by-( 2 * b ) finite rectangles animated along a number line of ( ( c - b ) / a )^n scale symmetry.

An R Package for Geneset Enrichment Workflows

A procedurally generated, cave-like dungeon/map creator for rogue-like games using the cellular automata method. During its development, I solved a common/limiting problem with this algorithm that might explain why it is not more commonly implemented in such games.

Extended experiments of "Growing Neural Cellular Automata" https://distill.pub/2020/growing-ca/

A curated list of awesome computational cryo-EM methods.

Agent-based modeling in JavaScript in the browser or on the server.

Experiment implementation of Multiple Neighborhoods Cellular Automata using WebGPU

An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

A Python library for working with Network Automata, Cellular Automata, and other discrete dynamical systems