SarekDetect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
Stars: ✭ 124 (-28.74%)
Beast2Bayesian Evolutionary Analysis by Sampling Trees
Stars: ✭ 156 (-10.34%)
Krakenuniq🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
Stars: ✭ 123 (-29.31%)
.codebits 📚 List of resources for Algorithms and Data Structures in Python & other CS topics @2017
Stars: ✭ 144 (-17.24%)
HyphyHyPhy: Hypothesis testing using Phylogenies
Stars: ✭ 122 (-29.89%)
Catalyst.jlChemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software
Stars: ✭ 163 (-6.32%)
ReadingA list of computer-science readings I recommend
Stars: ✭ 1,919 (+1002.87%)
Javainterview最全的Java技术知识点,以及Java源码分析。为开源贡献自己的一份力。
Stars: ✭ 154 (-11.49%)
CirclatorA tool to circularize genome assemblies
Stars: ✭ 121 (-30.46%)
BooksMy slides and notes
Stars: ✭ 121 (-30.46%)
GstoolsGSTools - A geostatistical toolbox: random fields, variogram estimation, covariance models, kriging and much more
Stars: ✭ 171 (-1.72%)
PhdA list of resources on how/why to do a PhD
Stars: ✭ 120 (-31.03%)
Escher Build, share, and embed visualizations of metabolic pathways.
Stars: ✭ 141 (-18.97%)
FreudPowerful, efficient particle trajectory analysis in scientific Python.
Stars: ✭ 118 (-32.18%)
Py6sA Python interface to the 6S Radiative Transfer Model
Stars: ✭ 117 (-32.76%)
HicexplorerHiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
Stars: ✭ 116 (-33.33%)
Aim42public repository for the "architecture improvement method reference"
Stars: ✭ 161 (-7.47%)
Python QuickuiScientific One-Liner Interactive GUI Library
Stars: ✭ 153 (-12.07%)
HgvsPython library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
Stars: ✭ 138 (-20.69%)
Dna2vecdna2vec: Consistent vector representations of variable-length k-mers
Stars: ✭ 117 (-32.76%)
Beast McmcBayesian Evolutionary Analysis Sampling Trees
Stars: ✭ 116 (-33.33%)
Books一些前端/设计相关的书籍(电子书)
Stars: ✭ 134 (-22.99%)
Curated resources📚 Curated lists for programming, books, movies, music, games, etc
Stars: ✭ 116 (-33.33%)
Latex Koma TemplateGeneric template for midsize and larger documents based on KOMA script classes.
Stars: ✭ 151 (-13.22%)
ArtemisArtemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Stars: ✭ 135 (-22.41%)
Reading MaterialList of some useful blogs, books, courses, papers etc. 📚
Stars: ✭ 116 (-33.33%)
Apbs Pdb2pqrAPBS - software for biomolecular electrostatics and solvation
Stars: ✭ 114 (-34.48%)
Bot EvolutionAn interesting display of evolution through neural networks and a genetic algorithm
Stars: ✭ 135 (-22.41%)
CoolerA cool place to store your Hi-C
Stars: ✭ 112 (-35.63%)
FqtoolsAn efficient FASTQ manipulation suite
Stars: ✭ 114 (-34.48%)
Dspp KerasProtein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.
Stars: ✭ 160 (-8.05%)
ClairvoyanteClairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
Stars: ✭ 151 (-13.22%)
HifiasmHifiasm: a haplotype-resolved assembler for accurate Hifi reads
Stars: ✭ 134 (-22.99%)
Bio4jBio4j abstract model and general entry point to the project
Stars: ✭ 113 (-35.06%)
Code Is ScienceScientific code needs to be open source and peer reviewed
Stars: ✭ 133 (-23.56%)
TardisTARDIS - Temperature And Radiative Diffusion In Supernovae
Stars: ✭ 112 (-35.63%)
Jortsortthe official website for jortSorting
Stars: ✭ 112 (-35.63%)
BiograknBioGrakn Knowledge Graph
Stars: ✭ 152 (-12.64%)
Awesome Single CellCommunity-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Stars: ✭ 1,937 (+1013.22%)
BioconvertBioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
Stars: ✭ 112 (-35.63%)
BiofastBenchmarking programming languages/implementations for common tasks in Bioinformatics
Stars: ✭ 112 (-35.63%)
OctopusBayesian haplotype-based mutation calling
Stars: ✭ 131 (-24.71%)
PyaniPython module for average nucleotide identity analyses
Stars: ✭ 111 (-36.21%)
Symengine.pyPython wrappers for SymEngine
Stars: ✭ 110 (-36.78%)
42@rsapkf's linkroll.
Stars: ✭ 1,906 (+995.4%)
Soapdenovo2Next generation sequencing reads de novo assembler.
Stars: ✭ 150 (-13.79%)
MrbayesMrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:
Stars: ✭ 131 (-24.71%)
CgrangesA C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)
Stars: ✭ 111 (-36.21%)
PegasusPegasus Workflow Management System - Automate, recover, and debug scientific computations.
Stars: ✭ 110 (-36.78%)
BiotiteA comprehensive library for computational molecular biology
Stars: ✭ 132 (-24.14%)
Awesome Programming Books📚 A curated list of awesome programming books (Algorithms and data structures, Artificial intelligence, Software Architecture, Human–computer interaction, Operating Systems, Database Systems, IT Security, Concurrency, Interpreters and Compilers, High-Performance Computing, Distributed Systems, Game Development, Mathematical optimization)
Stars: ✭ 1,532 (+780.46%)
Awesome ResourcesAwesome resources for coding and learning: open source projects, websites, books e.g.
Stars: ✭ 1,482 (+751.72%)