941 Open source projects that are alternatives of or similar to Awesome Biology

📚 The list of vision-based SLAM / Visual Odometry open source, blogs, and papers

Deep Learning for Astronomers with Tensorflow

GCP Essentials for Bioinformatics Researchers

A curated list for awesome kubernetes sources 🚢🎉

计算机领域经典书籍

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

Open-source software for volunteer computing and grid computing.

Bayesian Evolutionary Analysis by Sampling Trees

🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results

MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.

nim wrapper for htslib for parsing genomics data files

A Practical and Efficient NCBI Taxonomy Toolkit

Notes from the book Kubernetes Up and Running

📚 List of resources for Algorithms and Data Structures in Python & other CS topics @2017

A Python library implementing the Data Access Protocol (DAP, aka OPeNDAP or DODS).

HyPhy: Hypothesis testing using Phylogenies

An easy framework for drafting scientific documents: Write (Markdown), Compile (PDF, Word, HTML), Share.

Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software

A rust drawing library for high quality data plotting for both WASM and native, statically and realtimely 🦀 📈🚀

Book publishing toolchain based on AsciiDoc

A robust and fast clustering method for amplicon-based studies

Design-of-experiment (DOE) generator for science, engineering, and statistics

Database of optical constants

A list of computer-science readings I recommend

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

最全的Java技术知识点，以及Java源码分析。为开源贡献自己的一份力。

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

A tool to circularize genome assemblies

Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

A curated list of bioinformatics bench-marking papers and resources.

Structural variant toolkit for VCFs

My slides and notes

Conda recipes for the bioconda channel.

GSTools - A geostatistical toolbox: random fields, variogram estimation, covariance models, kriging and much more

UXF - Framework for creating human behaviour experiments in Unity

A list of resources on how/why to do a PhD

EDAM is an ontology of bioinformatics types of data including identifiers, data formats, operations and topics.

Build, share, and embed visualizations of metabolic pathways.

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

Powerful, efficient particle trajectory analysis in scientific Python.

MyGene.info: A BioThings API for gene annotations

Bioconductor cheat sheet

Periodic elements data

Project Home repo for Central Dockerfile and Project-wide issues

parallel fastq-dump wrapper

VAPOR is the Visualization and Analysis Platform for Ocean, Atmosphere, and Solar Researchers

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

Provides access to complex Bioinformatics software (even BioLinux!) in just one command.

public repository for the "architecture improvement method reference"

📘 前端开发-学习资料库 (开源书籍，规范，博客社区，面试题)。前端开发者，是这个互联网时代不可缺少的角色，我们彼此相爱，我们共同学习。

Bayesian Evolutionary Analysis Sampling Trees

《Python3 标准库》电子书和配套代码 "The Python Standard Library by Example" ebook and source code 一本又厚又全的讲解Python3标准库的书籍（1000多页）适合当作字典参考或者闲暇时慢慢阅读。

一些前端/设计相关的书籍（电子书）

技术书籍等

Rucio - Scientific Data Management

SortMeRNA: next-generation sequence filtering and alignment tool

Science-based games - a collaborative list

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

Fast Reference-Guided Scaffolding of Genome Assembly Contigs. RagTag, the successor to RaGOO, is now available here: https://github.com/malonge/RagTag

R package for analyzing single-cell RNA-seq data