795 Open source projects that are alternatives of or similar to Awosome Bioinformatics

写疾病数据分析用到的所有东西

MATLAB library for non-negative matrix factorization (NMF): Version 1.8.1

Introduction to Data Analysis, using R (2013)

Tools and Docs on the Azure Data Science Virtual Machine (http://aka.ms/dsvm)

code for reading and processing Allen Institute for Brain Science data

source{d} Community Edition (CE)

Ten Quick Tips for Deep Learning in Biology

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

An open source book to learn data science, data analysis and machine learning, suitable for all ages!

Next generation sequencing reads de novo assembler.

📖 [译] Matplotlib 用户指南

A Portfolio of my Data Science Projects

Proof-of-concept seq-to-graph mapper and graph generator

MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.

Rapid large-scale prokaryote pan genome analysis

📈📊📱💻🖥️An elegant modern declarative data visualization chart framework for iOS, iPadOS and macOS. Extremely powerful, supports line, spline, area, areaspline, column, bar, pie, scatter, angular gauges, arearange, areasplinerange, columnrange, bubble, box plot, error bars, funnel, waterfall and polar chart types. 极其精美而又强大的跨平台数据可视化图表框架,支持柱状图、条形图、…

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

Package for fetching metadata and downloading data from SRA/ENA/GEO

goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

Machine learning fundamentals lesson in interactive notebooks

Intuitive local web frontend for the BLAST bioinformatics tool

主要是爬虫与数据分析项目总结，外加建模与机器学习，模型的评估。

Annotated data.

parallel fastq-dump wrapper

Easy to use Python library of customized functions for cleaning and analyzing data.

JavaScript data transformation and analysis toolkit inspired by Pandas and LINQ.

A Collection Python EEG (+ ECG) Analysis Utilities for OpenBCI and Muse

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

👨🏽‍🏫You can learn about what data science is and why it's important in today's modern world. Are you interested in data science?🔋

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

GenomeTools genome analysis system.

Workshop on basic machine learning, computational modeling, psychophysics, basic data analysis and experiment design

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

Bayesian haplotype-based mutation calling

Python package for graph neural networks in chemistry and biology

A comprehensive library for computational molecular biology

Airbyte is an open-source EL(T) platform that helps you replicate your data in your warehouses, lakes and databases.

TipDM建模平台，开源的数据挖掘工具。

Monitoring system for data teams. Computing health checks on data, visualizing and alerting on them.

Fast multi-line FASTA/Q reader in several programming languages

the `pipeline` shell command

Manipulate JSON-like data with NumPy-like idioms.

Build a data visualization dashboard with simple snippets of python code

Countly Product Analytics SDK for websites and web applications

Notes for Deep Learning Specialization Courses led by Andrew Ng.

Visualizer for pandas data structures

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Salentin et al. (2015), https://www.doi.org/10.1093/nar/gkv315

Extract data from a wide range of Internet sources into a pandas DataFrame.

ECG classification programs based on ML/DL methods

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Fast Reference-Guided Scaffolding of Genome Assembly Contigs. RagTag, the successor to RaGOO, is now available here: https://github.com/malonge/RagTag

Various teaching material

OctoSQL is a query tool that allows you to join, analyse and transform data from multiple databases and file formats using SQL.

ESC Team's scorecard tools

Programming with Python

📖 每一个伟大的思想和行动都有一个微不足道的开始

Protein Graph Library