1911 Open source projects that are alternatives of or similar to Bedops

A curated list of bioinformatics bench-marking papers and resources.

A faster lmm for GWAS. Supports GPU backend.

A curated list of awesome bioinformatics software.

De novo assembly based variant calling pipeline for Illumina short reads

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

A fast and sensitive gapped read aligner

An interactive web tool for quality control of DNA sequencing data

UGENE is free open-source cross-platform bioinformatics software

nim wrapper for htslib for parsing genomics data files

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

Ten Quick Tips for Deep Learning in Biology

An image compress package like Luban for Dart

The CIDLib general purpose C++ development environment

Learn how to build a CI/CD pipeline for SAM-based applications

facebook hacking toolkit

A modular-designed and easy-to-use microservices framework in Go.

The Cyber Swiss Army Knife - a web app for encryption, encoding, compression and data analysis

A simple set type for the Go language. Trusted by Docker, 1Password, Ethereum and Hashicorp.

Shared resource dispatcher

Reducer factory functions for common data structures: counters, maps, lists (queues, stacks), sets, etc.

spacy-wordnet creates annotations that easily allow the use of wordnet and wordnet domains by using the nltk wordnet interface

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

🐍 Python library implementing sorted containers with state-of-the-art query performance and compressed memory usage

The sources of the openSNP website

Genome assembly evaluation tool

If string, numeric, symbol and nil values wanna be a boolean value, they can with the new #to_b method (and more).

Hassle-free HTML to PDF conversion abstraction library.

LZ4 bindings for Python

BatchFlow helps you conveniently work with random or sequential batches of your data and define data processing and machine learning workflows even for datasets that do not fit into memory.

Image server toolkit in Go

Cuneiform distributed programming language

CLI tool for texture compression using ASTC, ETC, PVRTC and S3TC in a KTX container.

Immutable and Memory-Efficient Maps and Sets in Go

The official Animation Compression Library Unreal Engine 4 plugin

LQ-Nets: Learned Quantization for Highly Accurate and Compact Deep Neural Networks

Old archived draft proposal for smart pipelines. Go to the new Hack-pipes proposal at js-choi/proposal-hack-pipes.

Elastic Crontab System 简单易用的分布式定时任务管理系统

Ray tracer with phong lighting, reflections, refractions, normal mapping, procedural textures, super sampling, and depth of field.

Hide secrets with invisible characters in plain text securely using passwords 🧙🏻‍♂️⭐

Fluid dynamics component of Chemical Engineering Design Library (ChEDL)

Open solution to the Toxic Comment Classification Challenge

A hands-on DevOps course covering the culture, methods and repeated practices of modern software development involving Packer, Vagrant, VirtualBox, Ansible, Kubernetes, K3s, MetalLB, Traefik, Docker-Compose, Docker, Taiga, GitLab, Drone CI, SonarQube, Selenium, InSpec, Alpine 3.10, Ubuntu-bionic, CentOS 7...

⚡ RAN! React . GraphQL . Next.js Toolkit ⚡ - SEO-Ready, Production-Ready, SSR, Hot-Reload, CSS-in-JS, Caching, CLI commands and more...

Ready to use Lean Test Automation Architecture using Java and Selenium WebDriver to speed up your test automation

Pipeline Extension for Live Trading

Tool to create bitmaps and fonts for embedded applications, v.2

Bioconductor cheat sheet

mito ETL tool

An end-to-end machine learning and data mining framework on Hadoop

Python package for graph neural networks in chemistry and biology

Zstd wrapper for .NET

Convertio APIs Client Library for PHP

Dashboard for your Deployment pipeline https://dashboardhub.io/

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

BioGrakn Knowledge Graph

Machine Learning Pipelines for Kubeflow

Viral genomics analysis pipelines

Python package to read sas, spss and stata files into pandas data frames. It is a wrapper for the C library readstat.

Singularity: Application containers for Linux