211 Open source projects that are alternatives of or similar to bids-matlab

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

BIDScoin converts your source-level neuroimaging data to BIDS

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

MATLAB/Octave GIfTI Library

The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠

Matlab toolbox for univariate and multivariate analysis of EEG data in the time and frequency domains

The Human Neocortical Neurosolver (HNN) is a software tool that gives researchers/clinicians the ability to develop/test hypotheses on circuit mechanisms underlying EEG/MEG data.

eelbrain.readthedocs.io

Simulation and optimization of neural circuits for MEG/EEG source estimates

Neuroimaging in Julia

🔧🧠 MEEGkit: MEG & EEG processing toolkit in Python 🧠🔧

Multi-modal Image Registration And Connectivity anaLysis

A lightweight I/O utility for the BrainVision data format, written in Python.

medical image visualization library and development toolkit

The MATLAB toolbox for MEG, EEG and iEEG analysis

3D Visualization of Brain MRI

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.

MNELAB – a GUI for MNE

A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.

Graph theory analysis of brain MRI data

A list of tutorials and other resources useful to learn open science and neuroimaging, EEG and MEG

A C++ package for low-frequency bio-electromagnetism solving forward problems in the field of EEG and MEG.

Utility functions for working with DICOM and BIDS neuroimaging data

List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data

jemal gem – Ruby interface to jemalloc

EEG Reader is an Android mobile application, which reads EEG signal from NeuroSky mobile device connected to smartphone via Bluetooth.

Brainy is a virtual MRI analyzer. Just upload the MRI scan file and get 3 different classes of tumors detected and segmented. In Beta.

Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)

Attention-Guided Version of 2D UNet for Automatic Brain Tumor Segmentation

A robust, easy-to-deploy non-uniform Fast Fourier Transform in TensorFlow.

SigViewer is a viewing application for biosignals.

STAGIN: Spatio-Temporal Attention Graph Isomorphism Network

Specialized tools for MRI

Resources for Book: Deep Learning for EEG-based Brain-Computer Interface: Representations, Algorithms and Applications

Fixed old Kai Borre Matlab code to run in Octave and hence be callable by Python to work with RINEX data

Open-Source board for converting RaspberryPI to Brain-computer interface

An AI-powered open-source medical image analysis toolbox

MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) data.

NEURAL: a neonatal EEG feature set in Matlab

SOFA Toolbox (API for Matlab, Octave)

3D viewer and post processing of reservoir models

Method container for computational neuroscience on brains.

Brain extraction in presence of abnormalities, using single and multiple MRI modalities

AntroPy: entropy and complexity of (EEG) time-series in Python

Advanced Normalization Tools in R

Code and data for Zhang, Lengersdorff et al. (2020)

Awesome Magnetic Resonance Imaging (MRI)

High level linear algebra library for Dlang

[IEEE TNSRE] "An Attention-based Deep Learning Approach for Sleep Stage Classification with Single-Channel EEG"

MESH2D is a MATLAB-based Delaunay mesh generator for two-dimensional geometries.

GNU Octave Mirror (https://hg.savannah.gnu.org/hgweb/octave)

Resources for the paper titled "EEG-GCNN: Augmenting Electroencephalogram-based Neurological Disease Diagnosis using a Domain-guided Graph Convolutional Neural Network". Accepted for publication (with an oral spotlight!) at ML4H Workshop, NeurIPS 2020.

Try several methods for MRI reconstruction on the fastmri dataset. Home to the XPDNet, runner-up of the 2020 fastMRI challenge.

NeuroInformatics Database

Software platform for clinical neuroimaging studies

Mirror of GetFEM repository

Python implementations of GRAPPA-like algorithms.

Android SDK for the NeuroSky MindWave Mobile Brainwave Sensing Headset