398 Open source projects that are alternatives of or similar to Biofast

Provides access to complex Bioinformatics software (even BioLinux!) in just one command.

compacted de Bruijn graph construction in low memory

A curated list of awesome Bioinformatics libraries and software.

MyGene.info: A BioThings API for gene annotations

Model and predict short DNA sequence features with neural networks

Genomics Extension for SQLite

Flexible genotype query among 30,000+ samples whole-genome

Demonstrating best practices for bioinformatics command line tools

Genome inference from a population reference graph

Bioinformatics Workbook repository

GO enrichment with python -- pandas meets networkx

Support Vector Structural Variation Genotyper

Race and ethnicity Imputation from Disease history with Deep LEarning

A fast whole-genome aligner based on de Bruijn graphs

pymzML - an interface between Python and mzML Mass spectrometry Files

Robust and efficient workflows using a simple language agnostic approach

MOLGENIS - for scientific data: management, exploration, integration and analysis.

😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎

SortMeRNA: next-generation sequence filtering and alignment tool

🌈Scaffold genome sequence assemblies using linked read sequencing data

Post-analysis of immune repertoire sequencing data

LAMBDA – the Local Aligner for Massive Biological DatA

✏️ A versatile DNA sequence optimizer

A library for generating an interactive SVG visualization of CWL workflows

Conda recipes for the bioconda channel.

EDAM is an ontology of bioinformatics types of data including identifiers, data formats, operations and topics.

Emperor a tool for the analysis and visualization of large microbial ecology datasets

FastQC port to Qt5: A quality control tool for high throughput sequence data.

Bayesian genotyper for structural variants

A collection of scripts and notes related to genomics and bioinformatics

Biological sequences for the julia language

Bioinformatics library for .NET

An interactive web tool for quality control of DNA sequencing data

A Practical and Efficient NCBI Taxonomy Toolkit

Protein-Level ASSembler (PLASS): sensitive and precise protein assembler

A robust and fast clustering method for amplicon-based studies

The START App: R Shiny Transcriptome Analysis Resource Tool

Inference of ploidy and heterozygosity structure using whole genome sequencing data

Solutions to assignments of Coursera Specializations - Deep learning, Machine learning, Algorithms & Data Structures, Image Processing and Python For Everybody

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

Global Biotic Interactions provides access to existing species interaction datasets

A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)

Characterization of Germline variants

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Antimicrobial Resistance Identification By Assembly

Parser and database to index the terpene profile of different strains of Cannabis from online databases

Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

A tutorial on methods of 16S analysis with QIIME 1

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates

Structural variant toolkit for VCFs

Python Programming for Biologists

A DSL for data-driven computational pipelines

List of tools and resources related to the 10x Genomics GEMCode/Chromium system

Python module for average nucleotide identity analyses

Pegasus Workflow Management System - Automate, recover, and debug scientific computations.

A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)

GCP Essentials for Bioinformatics Researchers

SquiggleKit: A toolkit for manipulating nanopore signal data