489 Open source projects that are alternatives of or similar to BioKEEN

A genome browser that shows long reads and complex variants better

(No maintenance) Detect gene fusion directly from raw fastq files

Ploidy agnostic phasing pipeline and algorithm

JAMP - Just Another Metabarcoding Pipeline

Deep learning infrastructure for bioinformatics

an implementation of NSGA-II in java

Toolkit for preparing genomes for submission to NCBI

Data and analysis for the Splatter paper

Toolset for SV simulation, comparison and filtering

A robust model for quantitative comparison of ChIP-Seq data sets.

Assembling the cause of phenotypes and genotypes from NGS data

Data intensive science for everyone.

Reads simulator

Aggregate results from bioinformatics analyses across many samples into a single report.

Computational Analysis of Novel Drug Opportunities

A plotly.js React component from Plotly 📈

Rapid large-scale prokaryote pan genome analysis

Python and C++ code for reading and writing genomics data.

MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

A cross-platform, efficient and practical CSV/TSV toolkit in Golang

Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads

C library for high-throughput sequencing data formats

Annotated data.

Biostar Q&A

SPARQL micro-services: A lightweight approach to query Web APIs with SPARQL

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

Versatile open-source tool for microbiome analysis

A faster lmm for GWAS. Supports GPU backend.

Workflow Description Language - Specification and Implementations

Syntax highlighting for computational biology

📖🔬☕️ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

SaffronTree: Reference free rapid phylogenetic tree construction from raw read data

A cross-platform command-line tool for executing jobs in parallel

The sources of the openSNP website

The next version of bwa-mem

A fast and lightweight streaming RDFa parser for JavaScript

A modern genome browser built with JavaScript and HTML5.

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

Signal-level algorithms for MinION data

Rapid determination of appropriate reference genomes.

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

Next generation sequencing reads de novo assembler.

Cutadapt removes adapter sequences from sequencing reads

Source code and datasets of EMNLP2018 paper: "Differentiating Concepts and Instances for Knowledge Graph Embedding".

Working with molecular structures in pandas DataFrames

R package for analyzing single-cell RNA-seq data

Java utilities for Bioinformatics

API for linked biological knowledge

Package for fetching metadata and downloading data from SRA/ENA/GEO

Highly customizable, ambiguity-aware dotplots for visual sequence analyses

CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

Useful bioinformatic scripts

3D printed sculpture of a DNA molecule, showing my own genome

WebGL Heatmap Viewer for Big Data and Bioinformatics

The tool for visualizing Swiss Open Government Data. Project ownership: Federal Office for the Environment FOEN

Official git repository for Biopython (originally converted from CVS)

Flexible genotype query among 30,000+ samples whole-genome