398 Open source projects that are alternatives of or similar to Blacklist

Conda recipes for the bioconda channel.

A fast whole-genome aligner based on de Bruijn graphs

✏️ A versatile DNA sequence optimizer

Post-analysis of immune repertoire sequencing data

😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎

pymzML - an interface between Python and mzML Mass spectrometry Files

GO enrichment with python -- pandas meets networkx

Python module for average nucleotide identity analyses

Robust and efficient workflows using a simple language agnostic approach

Race and ethnicity Imputation from Disease history with Deep LEarning

A curated list of awesome Bioinformatics libraries and software.

🌈Scaffold genome sequence assemblies using linked read sequencing data

A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)

Bioinformatics Workbook repository

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

SquiggleKit: A toolkit for manipulating nanopore signal data

Demonstrating best practices for bioinformatics command line tools

MyGene.info: A BioThings API for gene annotations

A cool place to store your Hi-C

Provides access to complex Bioinformatics software (even BioLinux!) in just one command.

GCP Essentials for Bioinformatics Researchers

Flexible genotype query among 30,000+ samples whole-genome

Pegasus Workflow Management System - Automate, recover, and debug scientific computations.

compacted de Bruijn graph construction in low memory

Genomics Extension for SQLite

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

UGENE is free open-source cross-platform bioinformatics software

Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

A collection of scripts and notes related to genomics and bioinformatics

Structural variant toolkit for VCFs

APBS - software for biomolecular electrostatics and solvation

List of tools and resources related to the 10x Genomics GEMCode/Chromium system

Inference of ploidy and heterozygosity structure using whole genome sequencing data

EDAM is an ontology of bioinformatics types of data including identifiers, data formats, operations and topics.

Benchmarking programming languages/implementations for common tasks in Bioinformatics

Bayesian genotyper for structural variants

Antimicrobial Resistance Identification By Assembly

Biological sequences for the julia language

dna2vec: Consistent vector representations of variable-length k-mers

An interactive web tool for quality control of DNA sequencing data

A DSL for data-driven computational pipelines

Protein-Level ASSembler (PLASS): sensitive and precise protein assembler

A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)

The START App: R Shiny Transcriptome Analysis Resource Tool

FastQC port to Qt5: A quality control tool for high throughput sequence data.

Solutions to assignments of Coursera Specializations - Deep learning, Machine learning, Algorithms & Data Structures, Image Processing and Python For Everybody

An efficient FASTQ manipulation suite

Global Biotic Interactions provides access to existing species interaction datasets

Bioinformatics library for .NET

Characterization of Germline variants

A Practical and Efficient NCBI Taxonomy Toolkit

A robust and fast clustering method for amplicon-based studies

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

NGLess: NGS with less work

Bio4j abstract model and general entry point to the project

SortMeRNA: next-generation sequence filtering and alignment tool

MOLGENIS - for scientific data: management, exploration, integration and analysis.