281 Open source projects that are alternatives of or similar to cath-tools

Neural Networks for Protein Sequence Alignment

A Kirby field for complex field structures.

Cellular Automata Simulator

Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.

No description or website provided.

3d engine implementation in DNA code!

Fetch PDB symbols directly from Microsoft's symbol servers

MOLeculAR structure annoTator

Sequence alignment tools

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

Converts between Windows PDB and Portable PDB formats.

Colorify - C# .Net Console Library with Text Format: colors, alignment and lot more [ Win+Mac+Linux ]

A web application to visualize and edit pathway models

Deep neural network for the alignment of GC-MS peaks

🔬A library of JavaScript components to represent biological data

Quantum Random Number Generator

View biological networks via Cytoscape.js and sbgn-ml

uLTRA is a long-read splice aligner with high accuracy from using a guiding annotation

Protein Secondary Structure predictor using Convolutional Neural Networks

MTCNN implement by tensorflow. Easy to training and testing.

Syntax highlighting for computational biology

📑Golang Is Good, Structure Is Bad

Python package for extracting and analyzing image representations from state-of-the-art neural networks for computer vision

📚 🔬 PIA - Protein Inference Algorithms

waka waka

A game of truly quantum chess, with interference, entanglement, etc.

Shows how to keep front end and back end separated

Convert an array of objects into a persistent or temporary directory structure.

A taxonomic toolbelt for R

medical image visualization library and development toolkit

A powerful open source data warehouse system

A web application to visualize and edit the pathway models represented by SBGN Process Description Notation

Ten Quick Tips for Deep Learning in Biology

Whole Exome/Whole Genome Sequencing alignment pipeline

Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software

This repository contains Leetcode Challenge Submissions.

Build, share, and embed visualizations of metabolic pathways.

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

NoPdb: Non-interactive Python Debugger

Biological sequences for the julia language

Application to assign secondary structure to proteins

Global Biotic Interactions provides access to existing species interaction datasets

Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.

A list of web-based interactive biological data visualizations.

Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria

The main repository for the development of the evolution game Thrive.

Nanopore demultiplexing, QC and alignment pipeline

Scripts to download genomes from the NCBI FTP servers

Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.

Chainer Chemistry: A Library for Deep Learning in Biology and Chemistry

No description or website provided.

A modern genome browser built with JavaScript and HTML5.

Lightweight header-only matrix library (C++) for numerical optimization and machine learning. Contact me if there is an exciting opportunity.

Differentiable molecular simulation of proteins with a coarse-grained potential

Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure

Facial Landmark Detection based on PyTorch

Modelling the Language of Life - Deep Learning Protein Sequences

Benchmarking common tasks on proteins in various languages and packages