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DashAnalytical Web Apps for Python, R, Julia, and Jupyter. No JavaScript Required.
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reg-genRegulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
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snpsea📊 Identify cell types and pathways affected by genetic risk loci.
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LigerLightweight Iterative Gene set Enrichment in R
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wdlRunRElastic, reproducible, and reusable genomic data science tools from R backed by cloud resources
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KaryoploterkaryoploteR - An R/Bioconductor package to plot arbitrary data along the genome
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homerkitRead HOMER motif analysis output in R.
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HumanPilotSpatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
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agentStore sensitive data such as API tokens
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statically📸 Generate Webpage Screenshots Using the Statically API
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simplesamSimple pure Python SAM parser and objects for working with SAM records
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MetaOmGraphMetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets
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nasapowerAPI Client for NASA POWER Global Meteorology, Surface Solar Energy and Climatology in R
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gene-oracleFeature extraction algorithm for genomic data
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geoparser⛔ ARCHIVED ⛔ R package for the Geoparser.io API
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tibannaTibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
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epanetReaderRead text files in Epanet's .inp and .rpt formats into R
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CAFE5Version 5 of the CAFE phylogenetics software
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catchA package for designing compact and comprehensive capture probe sets.
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saffrontreeSaffronTree: Reference free rapid phylogenetic tree construction from raw read data
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hotsubCommand line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
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travis⛔ ARCHIVED ⛔ Set Up 'Travis' for Testing and Deployment
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ntHashFast hash function for DNA sequences
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cranlogsDownload Logs from the RStudio CRAN Mirror
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atroposAn NGS read trimming tool that is specific, sensitive, and speedy. (production)
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RNArtistCoreA Kotlin DSL and library to create and plot RNA 2D structures
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CoNekTCoNekT (short for Co-expression Network Toolkit) is a platform to browse co-expression data and enable cross-species comparisons.
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shaprExplaining the output of machine learning models with more accurately estimated Shapley values
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mikropmlUser-Friendly R Package for Supervised Machine Learning Pipelines
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rLandsatR Package to make Landsat8 data accessible
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paccmann datasetspytoda - PaccMann PyTorch Dataset Classes. Read the docs: https://paccmann.github.io/paccmann_datasets/
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heddlrBring a functional programming mindset to R Markdown document generation
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pyrpipeReproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
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scclustevalSingle Cell Cluster Evaluation
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cablecuttrAn R wrapper for CanIStream.It API
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dnaioRead and write FASTQ and FASTA efficiently from Python
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NeuroSEEDImplementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)
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hotmapWebGL Heatmap Viewer for Big Data and Bioinformatics
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slamdunkStreamlining SLAM-seq analysis with ultra-high sensitivity
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musicMusic Theory in R
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Binning refinerImproving genome bins through the combination of different binning programs
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sacred📖 Sacred texts in R
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siriusSIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)
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biolink-apiAPI for linked biological knowledge
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rkmhClassify sequencing reads using MinHash.
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corrgramCorrelograms
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CeleScopeSingle Cell Analysis Pipelines
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awesome-phagesA curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.
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destatiscleanrImports and cleans data from official German statistical offices to jump-start the data analysis
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dysgudysgu-SV is a collection of tools for calling structural variants using short or long reads
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protwisProtwis is the backbone of the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G protein-coupled receptors (GPCRs).
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