464 Open source projects that are alternatives of or similar to cloud-genomics

Introduction to the Command Line for Genomics

Data Wrangling and Processing for Genomics

Data Management with SQL for Ecologists

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Databases and SQL

Programming with R

Python for Atmosphere and Ocean Scientists

The Organization lesson for the Reproducible Science Curriculum

Extra Unix Shell Material

Programming with MATLAB

Library Carpentry: Introduction to Working with Data (Regular Expressions)

R for Reproducible Scientific Analysis

Automation and Make

Plotting and Programming in Python

Library Carpentry Wikidata

Version Control with Git

Data Analysis and Visualization in Python for Ecologists

Introduction to Geospatial Raster and Vector Data with R

The Unix Shell

Programming with Python

Data Analysis and Visualization in R for Ecologists

Packaging and Publishing with Python

Styles for The Carpentries lessons. No README to avoid merge conflicts with lessons. Demo 👇

Introduction to Geospatial Raster and Vector Data with Python

Learn Deep Learning with Python

Reproducible Computational Environments using Containers

Tidy data for librarians

A Carpentry style lesson on machine learning with Python and scikit-learn.

Instructor Training

Image Processing with Python

Python for Atmosphere and Ocean Scientists

The Carpentries Workshop Template

Lesson materials for an Introduction to High Performance Computing in the tradition of Software Carpentry

Introduction to Conda for (Data) Scientists

📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.

Simple pure Python SAM parser and objects for working with SAM records

Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources

Provide R access to the NCI Genomic Data Commons portal.

Version 2.1.0 released

An interactive web portal for exploring immuno-oncology data

PERF is an Exhaustive Repeat Finder

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

dysgu-SV is a collection of tools for calling structural variants using short or long reads

Fast alignment and preprocessing of chromatin profiles

For language Grammar

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

PyTorch Implementation of Google's Parallel Tacotron 2: A Non-Autoregressive Neural TTS Model with Differentiable Duration Modeling

A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment

Um projeto para ajudar pessoas a conquistarem o seu melhor

A collection of the work of Edward Estlin Cummings, as it enters the public domain.

Toolkit for preparing genomes for submission to NCBI

An open-access bioinformatics text

Compute N50/NG50 and auN/auNG

Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads

A faster lmm for GWAS. Supports GPU backend.

(WIP) best-practices workflow for rare disease

A simple command-line tool to download data from Joint Genome Institute databases

Open Greek New Testament Project; NA28 / NA27 Equivalent Text & Resources

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.