34 Open source projects that are alternatives of or similar to DeconvolutionLab2

Simple demo of structured illumination microscopy image fusion via Richardson-Lucy deconvolution

A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/remote_refocus/

Manual, source-code and binaries for the NanoJ-Fluidics project

Pixel Consensus Voting for Panoptic Segmentation (CVPR 2020)

An interactive image processing program for biologists written in Python.

Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.

Causal Deconvolution of Networks by Algorithmic Generative Models

A general framework for optimizing DNN dataflow on systolic array

🔬🍸 Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ

A lightweight python module to interact with atlases for systems neuroscience

Gaussian processes and Bayesian optimization for images and hyperspectral data

Deep and Machine Learning for Microscopy

Lattice light-sheet post-processing utility.

Multiple file format reading directly into napari using pure Python

Automated 3D cell detection and registration of whole-brain images

Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.

native Python dataclasses for the OME data model

Python samples for Micro-Manager: image acquisition and microscope control system

Example of Deconvnet in PyTorch for VGG16

Axon/Myelin segmentation using Deep Learning

Open Delmic Microscope Software

Config and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.

Official Python implementation of the 'Sparse deconvolution'-v0.3.0

Code for my master's thesis. Instance segmentation of fluorescence microscopy images with deep learning.

A collection of tools for painting super-resolution images

ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.

Automated 3D brain registration with support for multiple species and atlases.

Iterative unfolding for Python

Deep Learning based cell composition analysis with Scaden.

DICOM Image Segmentation with CNNs in Tensorflow

No description or website provided.

Fast and Accurate 3D PSF Computation for Fluorescence Microscopy

Single-cell fluorescence microscopy data analysis

A convex 3D deconvolution algorithm for low photon count fluorescence imaging