936 Open source projects that are alternatives of or similar to Deepvariant

A list of resources on how/why to do a PhD

Renders papers from arXiv as responsive web pages so you don't have to squint at a PDF.

🎓 Tidy tools for academics

The code powering code.org and studio.code.org

Post-analysis of immune repertoire sequencing data

MDAnalysis is a Python library to analyze molecular dynamics trajectories.

Deep Learning for Astronomers with Tensorflow

A cross-platform, efficient and practical CSV/TSV toolkit in Golang

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

Cuneiform distributed programming language

Robust and efficient workflows using a simple language agnostic approach

Downloads pdfs via a DOI number, article title or a bibtex file, using the database of libgen(sci-hub) , arxiv

The START App: R Shiny Transcriptome Analysis Resource Tool

A mindmap summarising Machine Learning concepts, from Data Analysis to Deep Learning.

Script to automatically create and run IGV snapshot batchscripts

Conda recipes for the bioconda channel.

Powerful, efficient particle trajectory analysis in scientific Python.

Solutions to assignments of Coursera Specializations - Deep learning, Machine learning, Algorithms & Data Structures, Image Processing and Python For Everybody

Bioconductor cheat sheet

Biostar Q&A

UXF - Framework for creating human behaviour experiments in Unity

poliastro - 🚀 Astrodynamics in Python

🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

SquiggleKit: A toolkit for manipulating nanopore signal data

Mendelable displays information about the elements of the periodic table in a modern and pleasant way.

Tools to work with variant call format files

Application for making ENCODE Blacklists

😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎

Versatile open-source tool for microbiome analysis

Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

Fast and smart citation reference parsing

HyPhy: Hypothesis testing using Phylogenies

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

A cross-platform command-line tool for executing jobs in parallel

MyGene.info: A BioThings API for gene annotations

Python library to handle Gene Ontology (GO) terms

Single cell perturbation prediction

A collection of Galaxy-related training material

Global Biotic Interactions provides access to existing species interaction datasets

Periodic elements data

Discovering known and novel miRNAs from small RNA sequencing data

🌀 ⚡️ 🌍 TextRank (automatic text summarization) for PHP8

Protein Graph Library

Open-source library for analyzing the results produced by ABINIT

MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.

A Python interface to the 6S Radiative Transfer Model

compacted de Bruijn graph construction in low memory

The perfect sidekick to your scientific inquiries

silx toolkit

Characterization of Germline variants

dna2vec: Consistent vector representations of variable-length k-mers

A friendly next-generation interface for Genomic data discovery powered by InterMine

Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

A collaboratively written review paper on deep learning, genomics, and precision medicine

Tutorials for the Astropy Project

structural variant calling and genotyping with existing tools, but, smoothly.

Genome inference from a population reference graph

A method for variant graph genotyping based on exact alignment of k-mers