112 Open source projects that are alternatives of or similar to desh-data

Das Nowcasting erstellt eine Schätzung des Verlaufs der Anzahl von bereits erfolgten SARS-CoV-2-Erkrankungsfällen in Deutschland unter Berücksichtigung des Diagnose-, Melde- und Übermittlungsverzugs.

Das Robert Koch-Institut stellt Systeme zur bundesweiten molekularen Surveillance des SRARS-CoV-2-Virus bereit. Jedes Labor in Deutschland, das SARS-CoV-2 sequenziert, ist laut der Verordnung zur molekulargenetischen Surveillance des Coronavirus SARS-CoV-2 verpflichtet, dem Robert Koch-Institut die Sequenz- und zugehörige Metadaten zu übermittel…

HMMRATAC peak caller for ATAC-seq data

Ultrafast Sample Placement on Existing Trees

De novo assembly from Oxford Nanopore reads.

🚦 Ampel Widget, um die aktuellen 🦠Corona-Zahlen (Inzidenz) des RKI für die Landkreise in 🇩🇪 Deutschland auf dem Smartphone anzuzeigen

Collects official SARS-CoV-2 infection statistics published by the city of Dresden.

A Python library for creating and manipulating musical patterns, designed for use in algorithmic composition, generative music and sonification. Can be used to generate MIDI events, MIDI files, OSC messages, or custom events.

🇩🇪 The best open source projects that were made and mainly contributed by German developers

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

A list of DB stations.

UGENE is free open-source cross-platform bioinformatics software

Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

Statistische Analyse und Visualisierung der täglichen Diagnoseschlüssel der deutschen COVID-19 Tracing-App (Corona-Warn-App).

A simple, decentralized. privacy-reserving contact tracing system

[IoT'20] Predicting the Growth and Trend of COVID-19 Pandemic using Machine Learning and Cloud Computing

Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

Scripts to maintain German law git repository

Intuitive local web frontend for the BLAST bioinformatics tool

중국 우한 바이러스 한국 확진자 통계

Rapid large-scale prokaryote pan genome analysis

Differential abundance (DA) and correlation analyses for microbial absolute abundance data

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

SARS-CoV-2 workflow for nanopore sequence data

Antimicrobial Resistance Identification By Assembly

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Polyrhythmic Sequencer library for Web Audio API.

Collection of scripts for bacterial genomics

Improve the quality of a denovo assembly by scaffolding and gap filling

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

Multilocus sequence typing by blast using the schemes from PubMLST

R package to obtain and analyze live data from the nCOVID19 coronavirus

Maximum likelihood demultiplexing

Structural variant toolkit for VCFs

xHLA: Fast and accurate HLA typing from short read sequence data

FASTQ compression

A Java API for high-throughput sequencing data (HTS) formats.

Collection template and associated materials for SARS-CoV-2 metadata

Sampler, Sequencer, Multi-engine synth and effects - in a box! [WIP]

Data preprocessing scripts and preprocessed data storage for COVID-19 Scenarios project

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Database of German Banks and their HBCI / FinTS endpoints

Analysis Pipeline for Single Cell ATAC-seq

COVID-19 tracking app - submission for https://wirvsvirushackathon.org/

A repository for setting up a RNAseq workflow

A HTML/JavaScript simulator for an epidemc on a population

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

Release COVID-19 (SARS-CoV-2) FDA / NHI drugs screening results.

A tool to circularize genome assemblies

Framework for Metastatic And Clonal History INtegrative Analysis

A collection of scripts and notes related to genomics and bioinformatics

Covid-19_Ampel | Zeigt neben der 7-Tage-Inzidenz weitere Infos zu einer Region.

Genomics Extension for SQLite

gargammel is an ancient DNA simulator

JavaScript client for the Deutsche Bahn HAFAS API.

Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

Java API Wrapper for tracking coronavirus (COVID-19, SARS-CoV-2) via https://git.io/Jvoep

Cloud-based single-cell copy-number variation analysis tool

Finds SNP sites from a multi-FASTA alignment file