1099 Open source projects that are alternatives of or similar to Fastp

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

UGENE is free open-source cross-platform bioinformatics software

Official code repository for GATK versions 4 and up

A package for designing compact and comprehensive capture probe sets.

Data intensive science for everyone.

A collection of publications on comparison of high-throughput sequencing technologies.

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

NGLess: NGS with less work

Analysis pipelines for sequencing data

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

A collection of scripts and notes related to genomics and bioinformatics

Structural variant toolkit for VCFs

A repository for setting up a RNAseq workflow

Tools for working with genomic and high throughput sequencing data.

Rapid large-scale prokaryote pan genome analysis

Collection of scripts for bacterial genomics

A tool to circularize genome assemblies

(No maintenance) Detect gene fusion directly from raw fastq files

A filtering SOCKS proxy server and client library written in nim.

Provides unified search model for Yii ActiveRecord

DNS-Firewall Python script for UNBOUND

SaffronTree: Reference free rapid phylogenetic tree construction from raw read data

An NGS read trimming tool that is specific, sensitive, and speedy. (production)

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

Easiest way to use RecyclerView. Reduce boilerplate code! You don't need to write adapters for listing pages anymore!

Assembling the cause of phenotypes and genotypes from NGS data

Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.

An interactive web tool for quality control of DNA sequencing data

jQuery UI widget for structured queries like "Contacts where Firstname starts with A and Birthday before 1/1/2000 and State in (CA, NY, FL)"...

Antimicrobial Resistance Identification By Assembly

Genomics Extension for SQLite

Search/filter functionality for Laravel's Eloquent models

R package for analyzing single-cell RNA-seq data

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

Allows old code to use new standards

Intuitive local web frontend for the BLAST bioinformatics tool

Easily add filtering, sorting, and pagination to your Node.js REST API through your old friend: the query string!

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

No description or website provided.

Configurable and modular approach to query Filters for Laravel

Java utilities for Bioinformatics

Tools to process and analyze deep sequencing data.

highly-efficient & lightweight mutation signature matrix aggregation

Method to optimally select samples for validation and resequencing

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

Spring Boot Data JPA with Filter, Pagination and Sorting

Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI

A simplified pipeline for ctDNA sequencing data analysis

A robust model for quantitative comparison of ChIP-Seq data sets.

Design Pattern that described by Python, This is the source code for the book of Everybody Know Design Patterns.

EasyGrid - VanillaJS Responsive Grid

My bioinfo toolbox

Project metadata manager for PEPs in Python

C library for high-throughput sequencing data formats

✨ Filterizr is a JavaScript library that sorts, shuffles and filters responsive galleries using CSS3 transitions ✨