632 Open source projects that are alternatives of or similar to Flowcraft

Chromosome visualization for the web

MISO: An open-source LIMS for NGS sequencing centres

The safe post-production pipeline - https://getavalon.github.io/2.0

A powerful open source data warehouse system

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

An open-source toolkit for large-scale genomic analysis

PipelineX: Python package to build ML pipelines for experimentation with Kedro, MLflow, and more

Ten Quick Tips for Deep Learning in Biology

Sample application and CD Pipeline for DevOps Dojo

spacy-wordnet creates annotations that easily allow the use of wordnet and wordnet domains by using the nltk wordnet interface

Code examples of fast and simple k-mer counters for tutorial purposes

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

A tool to circularize genome assemblies

Elastic Crontab System 简单易用的分布式定时任务管理系统

A SingleCell RNASeq pre-processing snakemake workflow

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

A Julia package for piping a value through a series of transformation expressions using a more convenient syntax than Julia's native piping functionality.

Open solution to the Toxic Comment Classification Challenge

Modern WebGL state wrapper for PEX: allocate GPU resources (textures, buffers), setup state pipelines and passes, and combine them into commands.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

NGLess: NGS with less work

mito ETL tool

A cool place to store your Hi-C

Old archived draft proposal for smart pipelines. Go to the new Hack-pipes proposal at js-choi/proposal-hack-pipes.

UGENE is free open-source cross-platform bioinformatics software

Viral genomics analysis pipelines

A file watcher and development tool.

An end-to-end machine learning and data mining framework on Hadoop

📺 TV dashboard for a global view on Gitlab Pipelines

Cloud ready pure-python streaming data pipeline library

A collection of scripts and notes related to genomics and bioinformatics

Machine Learning Pipelines for Kubeflow

Inference of ploidy and heterozygosity structure using whole genome sequencing data

c++ LINQ -like library of higher-order functions for data manipulation

GoCD (gocd.org) plugin to push build notifications to Slack

☔️ => ⛅️ => ☀️

AQUAS TF and histone ChIP-seq pipeline

Machine learning platform for Web developers

A DSL for data-driven computational pipelines

Function Composition for OpenFaaS

VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.

Deploy machine learning projects developed in Python, to Kubernetes. Accelerated MLOps 🚀

Bioinformatics library for .NET

Jenkins实践文档 最新站点地址: http://www.idevops.site

Genomics Extension for SQLite

Demo of Jenkins Configuration-As-Code with Docker and Groovy Hook Scripts

VectorSQL is a free analytics DBMS for IoT & Big Data, compatible with ClickHouse.

Jenkins pipeline steps for integration with JIRA.

A curated list of bioinformatics bench-marking papers and resources.

DSP pipeline

Get protein embeddings from protein sequences

[爬虫框架 (golang)] An awesome Go concurrent Crawler(spider) framework. The crawler is flexible and modular. It can be expanded to an Individualized crawler easily or you can use the default crawl components only.

Dynamic Kernel Matching (DKM) for Classifying Data with Non-conforming Features

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

A genome browser that shows long reads and complex variants better

Open Source Pipeline for Maya, Houdini, 3ds Max and Nuke .

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

Terraform Module for CI/CD with AWS Code Pipeline and Code Build for ECS https://cloudposse.com/

Script to automatically create and run IGV snapshot batchscripts