632 Open source projects that are alternatives of or similar to Flowcraft

A python-based isomiR quantification and analysis pipeline

Fun functional programming with pipelinable functions

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Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

A reliable, high-performance tool for building observability data pipelines.

Helper for dealing with secrets in kubernetes.

Viral genomics analysis pipelines

Clustering scRNAseq by genotypes

Efficient variant-call data storage and retrieval library using the TileDB storage library.

A proof of concept of RNAseq pipeline

A file watcher and development tool.

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Tired of pushing to test your .gitlab-ci.yml?

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A React web application to query and share any PostgreSQL database.

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

🇨🇳 MyDataHarbor是一个致力于解决任意数据源到任意数据源的分布式、高扩展性、高性能、事务级的数据同步中间件。帮助用户可靠、快速、稳定的对海量数据进行准实时增量同步或者定时全量同步，主要定位是为实时交易系统服务，亦可用于大数据的数据同步（ETL领域）。

📺 TV dashboard for a global view on Gitlab Pipelines

mgatk: mitochondrial genome analysis toolkit

Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.

Cloud ready pure-python streaming data pipeline library

No description or website provided.

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

A curated collection of publicly available resources on how companies around the world practice DevOps

A collection of scripts and notes related to genomics and bioinformatics

Continuous Integration Platform

tools for working with genome variation graphs

Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis

Machine Learning Pipelines for Kubeflow

tfa is a 2fa cli tool that aims to help you to generate 2fa code on CI/CD pipelines.

Opinionated full stack web app's boilerplate, ready to be deployed to AWS platform.

Grammar of Scalable Linked Interactive Nucleotide Graphics

Inference of ploidy and heterozygosity structure using whole genome sequencing data

A pure bash clojureish CI pipeline

a library to define a continuous delivery pipeline in code

The Rx Asset Management System for motion picture production

c++ LINQ -like library of higher-order functions for data manipulation

A lightweight, distributed workflow system

Declarative continuous deployment for Kubernetes.

Towhee is a framework that is dedicated to making neural data processing pipelines simple and fast.

GoCD (gocd.org) plugin to push build notifications to Slack

Tools for analyzing 10X Genomics data

Easy pipelines for pandas DataFrames.

A rapid http(s) benchmark tool written in Go

☔️ => ⛅️ => ☀️

Framework for Creating Pipeline Software

a realtime plotting utility for terminal/console with data input from stdin

MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.

AQUAS TF and histone ChIP-seq pipeline

annotate a VCF with other VCFs/BEDs/tabixed files

A simple Spark-powered ETL framework that just works 🍺

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

Fast genome-wide functional annotation through orthology assignment

Scripts to download genomes from the NCBI FTP servers

Proof-of-concept seq-to-graph mapper and graph generator

Identify hardcoded secrets and dangerous behaviours

Intuitive local web frontend for the BLAST bioinformatics tool