2131 Open source projects that are alternatives of or similar to Flowr

An open source platform for managing and analyzing biomedical big data

DEPRECIATED! Please use nf-core/tools instead

Workflow Description Language - Specification and Implementations

UGENE is free open-source cross-platform bioinformatics software

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

A DSL for data-driven computational pipelines

A library to build and execute typed scientific workflows

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

A repository for setting up a RNAseq workflow

Data intensive science for everyone.

Robust, flexible and resource-efficient pipelines using Go and the commandline

** THIS PROJECT IS STOPPED ** An open source CaaS for Docker, batteries included.

🔬 BEDOPS: high-performance genomic feature operations

GCP Essentials for Bioinformatics Researchers

Monitor your GPUs whether they are on a single computer or in a cluster

A library to display an interactive editor for any graph-like data.

A to Z Sky Operating System / Microservice Chassis Framework

A toolkit for creating and managing declarative, self-healing infrastructure.

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.

A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specification and a web application for managing and executing those WES services.

Create clusters of VMs on the cloud and configure them with Ansible.

Cluster Lifecycle Manager (CLM) to provision and update multiple Kubernetes clusters

Use this Property Manager CLI to automate Akamai property changes and deployments across many environments.

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

ATAC-seq peak-calling, QC and differential analysis pipeline

Cuneiform distributed programming language

Enterprise application server for Node.js and Metarhia private cloud ⚡

Workflows for automation of AWS services setup from Github CI/CD

Pipeline is a package to build multi-staged concurrent workflows with a centralized logging output.

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

kubicorn is a free and open source project that solves the Kubernetes infrastructure problem and gives users a rich golang library to work with infrastructure.

System for containerized apps management. From build to scaling.

🍴 Web applications made easy. Since 2011.

Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub

Intel HPC Containers using Singularity

CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens

Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R

A simplified pipeline for ctDNA sequencing data analysis

R pipeline for computing persistent homology in topological data analysis. See https://doi.org/10.21105/joss.00860 for more details.

Function-oriented Make-like declarative workflows for R

Starter Kit for Node.js v14.x, minimum dependencies 🚀

Pegasus Workflow Management System - Automate, recover, and debug scientific computations.

A cross-platform, efficient and practical CSV/TSV toolkit in Golang

🐳🐳🐳 This repository is part of a blog series on Docker Swarm example using VirtualBox, OVH Openstack, Azure and Amazon Web Services AWS

Lightweight Iterative Gene set Enrichment in R

A distributed workflow runner focusing on performance and simplicity.

Lightweight document management system packed with all the features you can expect from big expensive solutions

An HPC workload manager and job scheduler for desktops, clusters, and clouds.

A library for generating an interactive SVG visualization of CWL workflows

contains handy groovy workflow-libs scripts

NLP pipeline software using common workflow language

Analysis pipelines for sequencing data

Codefresh runtime-environment agent

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

A collection of scripts and notes related to genomics and bioinformatics

A cross-platform command-line tool for executing jobs in parallel

Snakemake-based workflow for detecting structural variants in WGS data

Example workflows for the drake R package

Parallel Workflow extension for Rake, runs on multicores, clusters, clouds.