peppyProject metadata manager for PEPs in Python
Stars: ✭ 29 (+26.09%)
GalaxyData intensive science for everyone.
Stars: ✭ 812 (+3430.43%)
DeepvariantDeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Stars: ✭ 2,404 (+10352.17%)
JvarkitJava utilities for Bioinformatics
Stars: ✭ 313 (+1260.87%)
PHATPathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
Stars: ✭ 17 (-26.09%)
ManormA robust model for quantitative comparison of ChIP-Seq data sets.
Stars: ✭ 16 (-30.43%)
catchA package for designing compact and comprehensive capture probe sets.
Stars: ✭ 55 (+139.13%)
GatkOfficial code repository for GATK versions 4 and up
Stars: ✭ 1,002 (+4256.52%)
BioconvertBioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
Stars: ✭ 112 (+386.96%)
AfterqcAutomatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Stars: ✭ 169 (+634.78%)
ctdna-pipelineA simplified pipeline for ctDNA sequencing data analysis
Stars: ✭ 29 (+26.09%)
DeeptoolsTools to process and analyze deep sequencing data.
Stars: ✭ 448 (+1847.83%)
reg-genRegulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
Stars: ✭ 64 (+178.26%)
ScdeR package for analyzing single-cell RNA-seq data
Stars: ✭ 147 (+539.13%)
OpenGene.jl(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
Stars: ✭ 60 (+160.87%)
SVCollectorMethod to optimally select samples for validation and resequencing
Stars: ✭ 20 (-13.04%)
FastpAn ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Stars: ✭ 966 (+4100%)
NglessNGLess: NGS with less work
Stars: ✭ 115 (+400%)
UgeneUGENE is free open-source cross-platform bioinformatics software
Stars: ✭ 112 (+386.96%)
HtslibC library for high-throughput sequencing data formats
Stars: ✭ 529 (+2200%)
MigmapHTS-compatible wrapper for IgBlast V-(D)-J mapping tool
Stars: ✭ 38 (+65.22%)
FgbioTools for working with genomic and high throughput sequencing data.
Stars: ✭ 166 (+621.74%)
atroposAn NGS read trimming tool that is specific, sensitive, and speedy. (production)
Stars: ✭ 109 (+373.91%)
gencoreGenerate duplex/single consensus reads to reduce sequencing noises and remove duplications
Stars: ✭ 91 (+295.65%)
platonIdentification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
Stars: ✭ 52 (+126.09%)
Circosjsd3 library to build circular graphs
Stars: ✭ 436 (+1795.65%)
WdlWorkflow Description Language - Specification and Implementations
Stars: ✭ 438 (+1804.35%)
CromwellScientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Stars: ✭ 655 (+2747.83%)
Biojava📖🔬☕️ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Stars: ✭ 434 (+1786.96%)
NucleusPython and C++ code for reading and writing genomics data.
Stars: ✭ 657 (+2756.52%)
ContainersBioinformatics containers
Stars: ✭ 435 (+1791.3%)
RushA cross-platform command-line tool for executing jobs in parallel
Stars: ✭ 421 (+1730.43%)
Fusion CoreMigrated to https://github.com/fusionjs/fusionjs
Stars: ✭ 647 (+2713.04%)
SambambaTools for working with SAM/BAM data
Stars: ✭ 409 (+1678.26%)
Bwa Mem2The next version of bwa-mem
Stars: ✭ 408 (+1673.91%)
Nsga Iian implementation of NSGA-II in java
Stars: ✭ 18 (-21.74%)
NgsdistEstimation of pairwise distances under a probabilistic framework
Stars: ✭ 6 (-73.91%)
KhmerIn-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
Stars: ✭ 640 (+2682.61%)
MaskfusionMaskFusion: Real-Time Recognition, Tracking and Reconstruction of Multiple Moving Objects
Stars: ✭ 404 (+1656.52%)
JcviPython library to facilitate genome assembly, annotation, and comparative genomics
Stars: ✭ 404 (+1656.52%)
SeqkitA cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
Stars: ✭ 607 (+2539.13%)
Co FusionCo-Fusion: Real-time Segmentation, Tracking and Fusion of Multiple Objects
Stars: ✭ 400 (+1639.13%)
JbrowseA modern genome browser built with JavaScript and HTML5.
Stars: ✭ 393 (+1608.7%)
ScipipeRobust, flexible and resource-efficient pipelines using Go and the commandline
Stars: ✭ 826 (+3491.3%)
Fusion🧰 A modern alternative to the Microsoft Assembly Binding Log Viewer (FUSLOGVW.exe)
Stars: ✭ 386 (+1578.26%)
Next🦍 A configurable component library for web built on React.
Stars: ✭ 4,045 (+17486.96%)
CsvtkA cross-platform, efficient and practical CSV/TSV toolkit in Golang
Stars: ✭ 566 (+2360.87%)
Bowtie2A fast and sensitive gapped read aligner
Stars: ✭ 365 (+1486.96%)
JampJAMP - Just Another Metabarcoding Pipeline
Stars: ✭ 19 (-17.39%)
CookiecutterDEPRECIATED! Please use nf-core/tools instead
Stars: ✭ 18 (-21.74%)
NanopolishSignal-level algorithms for MinION data
Stars: ✭ 367 (+1495.65%)
Cs Video CoursesList of Computer Science courses with video lectures.
Stars: ✭ 27,209 (+118200%)
Multi sensor fusionMulti-Sensor Fusion (GNSS, IMU, Camera) 多源多传感器融合定位 GPS/INS组合导航 PPP/INS紧组合
Stars: ✭ 357 (+1452.17%)
PlantcvPlant image analysis using OpenCV
Stars: ✭ 352 (+1430.43%)
FormilyAlibaba Group Unified Form Solution -- Support React/ReactNative/Vue2/Vue3
Stars: ✭ 6,554 (+28395.65%)
DeeppurposeA Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
Stars: ✭ 342 (+1386.96%)
SeqtkToolkit for processing sequences in FASTA/Q formats
Stars: ✭ 799 (+3373.91%)
MegahitUltra-fast and memory-efficient (meta-)genome assembler
Stars: ✭ 343 (+1391.3%)