Miscellaneous R CodeCode that might be useful to others for learning/demonstration purposes, specifically along the lines of modeling and various algorithms. Now almost entirely superseded by the models-by-example repo.
Stars: ✭ 146 (+265%)
ArsenalAn Arsenal of 'R' Functions for Large-Scale Statistical Summaries
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Soss.jlProbabilistic programming via source rewriting
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individualR Package for individual based epidemiological models
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stantargetsReproducible Bayesian data analysis pipelines with targets and cmdstanr
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brmstoolsHelper functions for brmsfit objects (DEPRECATED)
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ElfiELFI - Engine for Likelihood-Free Inference
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geojsonGeoJSON classes for R
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MapscannerR package to print maps, draw on them, and scan them back in
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WellknownWKT <-> GeoJSON
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covidestimBayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States
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opencage🌐 R package for the OpenCage API -- both forward and reverse geocoding 🌐
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Covid19modelCode for modelling estimated deaths and cases for COVID19.
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GpstuffGPstuff - Gaussian process models for Bayesian analysis
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Landmark Detection Robot Tracking SLAM-Simultaneous Localization and Mapping(SLAM) also gives you a way to track the location of a robot in the world in real-time and identify the locations of landmarks such as buildings, trees, rocks, and other world features.
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BcpdBayesian Coherent Point Drift (BCPD/BCPD++); Source Code Available
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HbayesdmHierarchical Bayesian modeling of RLDM tasks, using R & Python
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StplanrSustainable transport planning with R
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GempyGemPy is an open-source, Python-based 3-D structural geological modeling software, which allows the implicit (i.e. automatic) creation of complex geological models from interface and orientation data. It also offers support for stochastic modeling to adress parameter and model uncertainties.
Stars: ✭ 396 (+890%)
metaBMABayesian Model Averaging for Random and Fixed Effects Meta-Analysis
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metadatMeta-analytic datasets for R
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PyCBC-TutorialsLearn how to use PyCBC to analyze gravitational-wave data and do parameter inference.
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crminer⛔ ARCHIVED ⛔ Fetch 'Scholary' Full Text from 'Crossref'
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de9imDE-9IM spatial predicate library implemented in Javascript.
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PyRatePyRate is a program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework.
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rdomainsClassifying the content of domains
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DoReMIFaSolTéléchargement des données sur le site de l'Insee
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coronainfobdReal-time corona-virus tracker of Bangladesh 🇧🇩 which includes latest updates, data visualization, public awareness from WHO and some advice to aware people. 🥰❤
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rcppcnpyRcpp bindings for NumPy files
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scMCAMouse cell atlas
Stars: ✭ 45 (+12.5%)
SCICoNESingle-cell copy number calling and event history reconstruction.
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mlr3tuningHyperparameter optimization package of the mlr3 ecosystem
Stars: ✭ 44 (+10%)
svae cf[ WSDM '19 ] Sequential Variational Autoencoders for Collaborative Filtering
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JovianMetagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.
Stars: ✭ 14 (-65%)
rdflib📦 High level wrapper around the redland package for common rdf applications
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trampTree Approximate Message Passing
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t8codeParallel algorithms and data structures for tree-based AMR with arbitrary element shapes.
Stars: ✭ 37 (-7.5%)
wqbcAn R package for water quality thresholds and index calculation for British Columbia
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probai-2019Materials of the Nordic Probabilistic AI School 2019.
Stars: ✭ 127 (+217.5%)
DP meansDirichlet Process K-means
Stars: ✭ 36 (-10%)
eiaAn R package wrapping the US Energy Information Administration open data API.
Stars: ✭ 38 (-5%)
hodur-visualizer-schemaHodur is a domain modeling approach and collection of libraries to Clojure. By using Hodur you can define your domain model as data, parse and validate it, and then either consume your model via an API or use one of the many plugins to help you achieve mechanical results faster and in a purely functional manner.
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packagefinderComfortable search for R packages on CRAN, either directly from the R console or with an R Studio add-in
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carvemeCarveMe: genome-scale metabolic model reconstruction
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chronological-map-phenotypesMachine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.
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rsgislibRemote Sensing and GIS Software Library; python module tools for processing spatial data.
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GeoArrays.jlSimple geographical raster interaction built on top of ArchGDAL, GDAL and CoordinateTransformations
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MathematicaStanA Mathematica package to interact with CmdStan
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xaringanBuilderAn R package for building xaringan slides into multiple outputs, including html, pdf, png, gif, pptx, and mp4.
Stars: ✭ 157 (+292.5%)
stan-distributionsA web app to visualize distributions in Stan. Uses Stan Math C++ compiled to Webassembly to evaluate the functions using actual Stan implementations. Uses d3.js for visualizations.
Stars: ✭ 30 (-25%)