GNPSDocumentationDocumentation for GNPS and related tools as written in mkdocs
Stars: ✭ 26 (-16.13%)
pyqmspyQms, generalized, fast and accurate mass spectrometry data quantification
Stars: ✭ 22 (-29.03%)
xcmsThis is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis
Stars: ✭ 124 (+300%)
ElMavenLC-MS data processing tool for large-scale metabolomics experiments.
Stars: ✭ 84 (+170.97%)
CoreMSCoreMS is a comprehensive mass spectrometry software framework
Stars: ✭ 20 (-35.48%)
tools-metabolomicsGalaxy tools for metabolomics maintained by Workflow4Metabolomics
Stars: ✭ 13 (-58.06%)
siriusSIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)
Stars: ✭ 32 (+3.23%)
QFeaturesQuantitative features for mass spectrometry data
Stars: ✭ 12 (-61.29%)
pFind3No description or website provided.
Stars: ✭ 20 (-35.48%)
isotopeHaskell library containing isotopic masses and relative abundances for elements from Hydrogen to Bismuth and Thorium and Uranium (excluding Technetium and promethium), i.e., all elements with naturally-occurring isotopes.
Stars: ✭ 17 (-45.16%)
glypyGlycan Analysis and Glycoinformatics Library for Python
Stars: ✭ 20 (-35.48%)
SmartPeakFast and Accurate CE-, GC- and LC-MS(/MS) Data Processing
Stars: ✭ 21 (-32.26%)
LFQ-AnalystThe repo for LFQ-Analyst
Stars: ✭ 17 (-45.16%)
pyprophetPyProphet: Semi-supervised learning and scoring of OpenSWATH results.
Stars: ✭ 23 (-25.81%)
Thermo-Raw-File-Reader.NET DLL wrapper for reading Thermo .Raw files. Uses ThermoFisher.CommonCore NuGet packages provided by Thermo Fisher Scientific
Stars: ✭ 18 (-41.94%)
RHermesRHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.
Stars: ✭ 22 (-29.03%)
ms deisotopeA library for deisotoping and charge state deconvolution of complex mass spectra
Stars: ✭ 21 (-32.26%)
pmartRThe pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data. This includes data transformation, specification of groups that are to be …
Stars: ✭ 19 (-38.71%)
q2-qemistreeHierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".
Stars: ✭ 23 (-25.81%)
pymsfilereaderThermo MSFileReader Python bindings
Stars: ✭ 58 (+87.1%)
pDeeppDeep: Predicting MS/MS Spectra of Peptides with Deep Learning
Stars: ✭ 24 (-22.58%)
QCxMSQuantum mechanic mass spectrometry calculation program
Stars: ✭ 25 (-19.35%)
IDBacAppA MALDI Mass Spectrometry Bioinformatics Platform
Stars: ✭ 20 (-35.48%)
OrgMassSpecROrganic/biological mass spectrometry data analysis (development version).
Stars: ✭ 24 (-22.58%)
philosopherA complete toolkit for shotgun proteomics data analysis
Stars: ✭ 82 (+164.52%)
rawDiagBrings Orbitrap Mass Spectrometry Data to Life; Multi-platform, Fast and Colorful R package.
Stars: ✭ 29 (-6.45%)
metaspaceCloud engine and platform for metabolite annotation for imaging mass spectrometry
Stars: ✭ 36 (+16.13%)
MS-CleanRNo description or website provided.
Stars: ✭ 21 (-32.26%)
PredFullThis work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network
Stars: ✭ 20 (-35.48%)
MALDIquantQuantitative Analysis of Mass Spectrometry Data
Stars: ✭ 48 (+54.84%)
mzQCReporting and exchange format for mass spectrometry quality control data
Stars: ✭ 21 (-32.26%)
nPYc-ToolboxThe nPYc-Toolbox defines objects for representing, and implements functions to manipulate and display, metabolic profiling datasets.
Stars: ✭ 14 (-54.84%)
isicleIn silico chemical library engine for high-accuracy chemical property prediction
Stars: ✭ 31 (+0%)
DAtestCompare different differential abundance and expression methods
Stars: ✭ 34 (+9.68%)
melonnpanModel-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
Stars: ✭ 20 (-35.48%)
Informed-ProteomicsTop down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data
Stars: ✭ 25 (-19.35%)
MSFraggerUltrafast, comprehensive peptide identification for mass spectrometry–based proteomics
Stars: ✭ 43 (+38.71%)
RforProteomicsUsing R and Bioconductor packages for the analysis and comprehension of proteomics data.
Stars: ✭ 52 (+67.74%)
batmassMass spectrometry data visualization
Stars: ✭ 32 (+3.23%)
mzLibLibrary for mass spectrometry projects
Stars: ✭ 19 (-38.71%)