414 Open source projects that are alternatives of or similar to gosling.js

Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.

Server component for HiGlass that manages and serves tiled data

Builds a docker container wrapping higlass-server and higlass-client in nginx

A 3D genome data processing tutorial for ISMB/ECCB 2017

Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer

🎟Using Plotly to visualize data from Lollapalooza

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

Python-based UCSC genome browser snapshot-taker and gallery-maker

Resource of human chromosome schematics & images

Development version of vioplot R package (CRAN maintainer)

Improve the quality of a denovo assembly by scaffolding and gap filling

simplified searching, fetching, and parsing records from NCBI using their E-utilities interface

A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains

Transcripts annotation and GO enrichment Fisher tests

Analyzing the gun lobby’s funding of Congress.

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

A Python package for interactive mapping and geospatial analysis with minimal coding in a Jupyter environment

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

The open-source IATI datastore for IATI data with RESTful web API providing XML, JSON, CSV output. It extracts and parses IATI XML files referenced in the IATI Registry and powered by Apache Solr.

Multilocus sequence typing by blast using the schemes from PubMLST

Simple Leaflet map with points from local CSV file

phenol: Phenotype ontology library

Explore gnomAD datasets on the web

A fast, scalable, and accurate local ancestry method.

🐳 Bio-dockers: dockerized bioinformatic tools

Ultrafast sequence typing and gene detection from NGS raw reads

Spark VCF data source implementation for Dataframes

Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data

WebAssembly modules for genomics

MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

Monitor ethernet traffic in real time with a 3D backend.

A package for designing activity-informed nucleic acid diagnostics for viruses.

Examples to get started with IBM Functional Genomics Platform

Bioconductor package for management of multi-assay data

Command line utility for manipulating Illumina-generated FastQ files.

Nextflow basic tutorial for newbie users

Predict AMPs in (meta)genomes and peptides

Big Compute Learning Labs

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

A library for manipulating bioinformatics sequencing formats in Apache Spark

An R framework for phylostratigraphy

Forward-time simulation in Python using fwdpp

pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)

Explore rearrangements and copy-number amplifications in a cancer genome

find large indels (in the blind spot between GATK/freebayes and SV callers)

Bead-based single-cell atac processing

Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation

A fast tool for hybrid genome assembly of long and short reads

A ninja python package that unifies the Google Earth Engine ecosystem.

Simple, batteries included, components to build beautiful data visualizations

GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language

A tool to plot significant regions of GWAS

📈 A curated list of awesome data visualization libraries and resources.

Numerical Encoding for Human Genetic Variants

Manhattan plot Generator

Analysing Capture Seq Count Data

Identify phage regions in bacterial genomes for masking purposes

Web application for the Officer's Fishery Information Sharing Hub (O-FISH). The web app allows agencies to gain insights from the aggregated information gathered during a routine vessel inspection (submitted via the web app).

Tools for analyzing 10X Genomics data