45 Open source projects that are alternatives of or similar to GraphBin

Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs

Improving genome bins through the combination of different binning programs

AMBER: Assessment of Metagenome BinnERs

Mapping-Assisted Targeted-Assembly for Metagenomics

Compare different differential abundance and expression methods

A package for designing compact and comprehensive capture probe sets.

Scalable long read self-correction and assembly polishing with multiple sequence alignment

Dynamic Graph-Based Label Propagation for Density Peaks Clustering

Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles

🚀 A sequencing simulator

An efficient index for the colored, compacted, de Bruijn graph

The MG-RAST Backend -- the API server

Predict AMPs in (meta)genomes and peptides

Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.

Deep learning for Metagenome Assembly Error Detection

A robust, extensible metagenomics pipeline

ganon classifies short DNA sequences against large sets of genomic sequences efficiently, with download and update of references (RefSeq/Genbank), taxonomic (NCBI/GTDB) and hierarchical classification, customized reporting and more

Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

Software for prediction of plasmid sequences in metagenomic assemblies

Meta-Omics Software for Community Analysis

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

gargammel is an ancient DNA simulator

A Community Tool for Transiting Exoplanet Science with the JWST & HST

A NetworkX implementation of Label Propagation from a "Near Linear Time Algorithm to Detect Community Structures in Large-Scale Networks" (Physical Review E 2008).

Strain-level abundances estimation in metagenomic samples using variation graphs

Find nearby 3D objects in constant time O(1).

No description or website provided.

Remove contaminated contigs from genomes using k-mers and taxonomies.

Bonsai: Fast, flexible taxonomic analysis and classification

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.

From genomes to phenotypes: Traitar, the microbial trait analyzer

Fast in-silico normalization algorithm for NGS data

Recentrifuge: robust comparative analysis and contamination removal for metagenomics

A tool for analysis of assembly graphs

MaAsLin2: Microbiome Multivariate Association with Linear Models

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

An interactive radial tree for functional hierarchies and omics data visualization

Metagenomics calibration R package

micca - MICrobial Community Analysis

No description or website provided.

VirNet: A deep attention model for viral reads identification

R package for microbiome biomarker discovery

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

De novo genome assembly and multisample variant calling