1035 Open source projects that are alternatives of or similar to Hh Suite

SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.

A fast whole-genome aligner based on de Bruijn graphs

DOM Text Based Multiple Sequence Alignment Library

MMseqs2: ultra fast and sensitive search and clustering suite

LAMBDA – the Local Aligner for Massive Biological DatA

A powerful open source data warehouse system

SeqAn's official repository.

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

Protein-Level ASSembler (PLASS): sensitive and precise protein assembler

SortMeRNA: next-generation sequence filtering and alignment tool

#100DaysOfCode - Learn by developing 100 unique apps to explore exciting tech stacks

Intuitive local web frontend for the BLAST bioinformatics tool

A curated list of resources for learning bioinformatics.

React component for Cytoscape.js network visualisations

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

TurboRLE-Fastest Run Length Encoding

Fast integer compression in C using the StreamVByte codec

A Patch for Dev-Ops community https://t.me/devOpsPatch

SmartSystemMenu extends system menu of all windows in the system

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

Engine for Mergify

An ultrafast memory-efficient short read aligner

🔬 BEDOPS: high-performance genomic feature operations

Open source clone of Theme Hospital

🚙 The open source route planner app with plenty of features.

A genome browser that shows long reads and complex variants better

code for reading and processing Allen Institute for Brain Science data

SDK for GPU accelerated genome assembly and analysis

Proof-of-concept seq-to-graph mapper and graph generator

AnsiPress - Simple L(Linux) E(NGINX) M(MariaDB) P(PHP7) Shared Hosting Setup

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

Python package for graph neural networks in chemistry and biology

Sistema de prevenção ao suicídio

Pothos SDR windows development environment

TCSVT2018 Pedestrian Alignment Network for Large-scale Person Re-identification

RAxML Next Generation: faster, easier-to-use and more flexible

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format

The HPC toolbox: fused matrix multiplication, convolution, data-parallel strided tensor primitives, OpenMP facilities, SIMD, JIT Assembler, CPU detection, state-of-the-art vectorized BLAS for floats and integers

Open sourece medical books in LaTeX. LaTeX写的中文开源医学书籍

GenomeTools genome analysis system.

☁️ Nextcloud server, a safe home for all your data

Parsing gigabytes of JSON per second

Pterodactyl is an open-source game server management panel built with PHP 7, React, and Go. Designed with security in mind, Pterodactyl runs all game servers in isolated Docker containers while exposing a beautiful and intuitive UI to end users.

Simple, minimalistic, and task-focused application for creating screenshots. Available for LInux, MacOS, WIndows

Official Repository for InstantCMS 2.x

Protein Graph Library

Also referred to as "The C Man"

CATransform3D manipulation made easy.

Deep learning infrastructure for bioinformatics

🔬 Assemble large genomes using short reads

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

📱 Nextcloud Android app

Python for Bioinformatics

Automatically synchronize subtitles to audiovisual content with a pretrained deep neural network and forced alignments. https://subaligner.readthedocs.io/

Reed-Solomon Erasure Code engine in Go, could more than 15GB/s per core

cPanel/WHM plugin for Let's Encrypt client

A new accessible interface for your smartphone, suitable for seniors

Flexbox & CSS-style Layout in Swift.