440 Open source projects that are alternatives of or similar to hlatyping

RNA-seq analysis pipeline for detection gene-fusions

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

Kourami: Graph-guided assembly for HLA alleles

Analysis of Chromosome Conformation Capture data (Hi-C)

minimalistic nucleic acid folding

UGENE is free open-source cross-platform bioinformatics software

programs and scripts, mainly python, for analyses related to nucleic or protein sequences

waka waka

Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences

RNASeq pipeline

Data intensive science for everyone.

Nanopore demultiplexing, QC and alignment pipeline

Analysis pipelines for sequencing data

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

A single-cell RNAseq pipeline for 10X genomics data

R pipeline for computing persistent homology in topological data analysis. See https://doi.org/10.21105/joss.00860 for more details.

A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using coalescent and concatenation approaches

G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.

The Rx Asset Management System for motion picture production

A Go package for engineering organisms.

🇨🇳 MyDataHarbor是一个致力于解决任意数据源到任意数据源的分布式、高扩展性、高性能、事务级的数据同步中间件。帮助用户可靠、快速、稳定的对海量数据进行准实时增量同步或者定时全量同步，主要定位是为实时交易系统服务，亦可用于大数据的数据同步（ETL领域）。

Binomica Public Repository for Biological Parts

Towhee is a framework that is dedicated to making neural data processing pipelines simple and fast.

An example of how to run a Golang project in Docker in a Buildkite pipeline

A package for designing activity-informed nucleic acid diagnostics for viruses.

HTML processing filters and utilities in Go version

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

A pure bash clojureish CI pipeline

Pytorch Implementation of GoEmotions 😍😢😱

🚀 Automate versioning, changelog creation, README updates and GitHub releases using GitHub Actions,npm, docker or bash.

This code is used to build & run a Docker container for performing predictions against a Spark ML Pipeline.

create a jenkins pipeline which uses terraform to manage AWS resources

🔬 De novo assembly of nanopore reads using nextflow

A library to facilitate machine learning on multi-dimensional images.

A lightweight, distributed workflow system

Fun functional programming with pipelinable functions

List of IARC bioinformatics nextflow pipelines

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

Helper for dealing with secrets in kubernetes.

A rapid http(s) benchmark tool written in Go

No description or website provided.

Framework for Creating Pipeline Software

Visualizing DNA Sequences via Javascript

An example of how to run Rails CI and test steps in parallel with Docker and Buildkite

♥ Essential Functions for DNA Manipulation

A pipelined implementation of the MIPS processor featuring hazard detection as well as forwarding

A python library to manipulate and transform indexable data (lists, arrays, ...)

Make it possible to chain regular functions

A curated collection of publicly available resources on how companies around the world practice DevOps

Content builder library for MonoGame.

Extensible streaming ingestion pipeline on top of Apache Spark

Catalyst.Classification

Plugin for Jenkins v2.138.2 or later, that triggers job builds on Bitbucket's push and pull request events.

Show Me A Graph - Command Line Graphing

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

This module allows a developer to upload SAPUI5/OpenUI5 sources into a SAP NetWeaver ABAP system.

Continuous Integration Platform

pipen - A pipeline framework for python