459 Open source projects that are alternatives of or similar to IARC-nf

Data intensive science for everyone.

DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.

Multi-sample somatic variant caller

An automated RNA-seq pipeline using Nextflow

UGENE is free open-source cross-platform bioinformatics software

A simplified pipeline for ctDNA sequencing data analysis

Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

Exome/Capture/RNASeq Pipeline Implementation using snakemake

Jenkins Blue Ocean pipeline editor

A python package for optimizing processing pipelines using statistical design of experiments (DoE).

Extensible streaming ingestion pipeline on top of Apache Spark

Framework for Creating Pipeline Software

Custom BASH script for build, archive, export and upload APK and IPA to server with Telegram notification

Show Me A Graph - Command Line Graphing

Skin export / import tools for Autodesk Maya

Handwritten digit recognizer using a feed-forward neural network and the MNIST dataset of 70,000 human-labeled handwritten digits.

pipen - A pipeline framework for python

🐳 Bio-dockers: dockerized bioinformatic tools

No description or website provided.

Efficient handling of FASTQ files from Python

Cancer Predisposition Sequencing Reporter (CPSR)

Gene fusion detection and visualization

This repo holds configuration for infrastructure used across the tektoncd org 🏗️

A high performance, high expansion, easy to use framework for AI application. 为AI应用的开发者提供一套统一的高性能、易用的编程框架，快速基于AI全栈服务、开发跨端边云的AI行业应用。

Python toolkit for building restartable pipelines

Content builder library for MonoGame.

a web system to allow users to automatically record history and manage complicated scientific workflows in web browsers involving the online spatial data facilities, high-performance computation platforms, and open-source libraries.

Whole Exome/Whole Genome Sequencing alignment pipeline

No description or website provided.

Plugin for Jenkins v2.138.2 or later, that triggers job builds on Bitbucket's push and pull request events.

Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay

A basic framework for pulmonary nodule detection and characterization in CT

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework

A PySide2 based file and asset manager for animation and CG productions.

A scalable bacterial genome assembly, annotation and analysis pipeline

An example of how to run a Node.js project in Docker in a Buildkite pipeline

K3ai-core is the core library for the GO installer. Go installer will replace the current bash installer

Extensive de-novo TE Annotator

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

Open source VFX pipeline tool

Open solution to the Google AI Object Detection Challenge 🍁

create a jenkins pipeline which uses terraform to manage AWS resources

A single-cell RNAseq pipeline for 10X genomics data

Nanopore demultiplexing, QC and alignment pipeline

Event-driven data pipelines

HUAWEI AV Pipeline Kit sample code project, which contains the Java sample code to implement functions like video playback, video super-resolution and media asset management. C++ sample code is contained for calling MediaFilter to use the sound event detection plugin.

Cloud-native pipelines leveraging Concourse, Pivotal Build Service and Spinnaker to deploy apps

A declarative KubeFlow Management Tool

create tool-agnostic, templated pipelines to be shared by multiple teams

A rapid http(s) benchmark tool written in Go

An example of how to run Rails CI and test steps in parallel with Docker and Buildkite

Faster BWA-MEM2 using learned-index

A library for creating and curating reproducible pipelines for scientific and industrial machine learning

MultiBranch Actions Trigger Plugin

Make your data processing easy

Spline is a tool that is capable of running locally as well as part of well known pipelines like Jenkins (Jenkinsfile), Travis CI (.travis.yml) or similar ones.

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.