404 Open source projects that are alternatives of or similar to immunedb

🔬 BEDOPS: high-performance genomic feature operations

A collection of publications on comparison of high-throughput sequencing technologies.

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

Single-Cell Analysis in Python. Scales to >1M cells.

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

Estimate metagenomic coverage and sequence diversity

MView extracts and reformats the results of a sequence database search or multiple alignment.

Javascript full-stack framework for Big Data visualisation and analysis

code for reading and processing Allen Institute for Brain Science data

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

DOM Text Based Multiple Sequence Alignment Library

A wrapper for the EnsEMBL REST API

A powerful open source data warehouse system

A curated list of resources for machine learning for small-molecule drug discovery

(formerly eelpond) an automated RNA-Seq workflow system

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

highly-efficient & lightweight mutation signature matrix aggregation

exploratory and interactive microbiome analyses based on heatmaps

DEPRECIATED! Please use nf-core/tools instead

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

A Python package for fast operations on 1-dimensional genomic signal tracks

Version 5 of the CAFE phylogenetics software

Robust, flexible and resource-efficient pipelines using Go and the commandline

GenomeTools genome analysis system.

Toolkit for processing sequences in FASTA/Q formats

No description or website provided.

Scalable genomic data analysis.

Protein Graph Library

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

Feature extraction algorithm for genomic data

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

Python for Bioinformatics

Unix, R and python tools for genomics and data science

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

List of Computer Science courses with video lectures.

Ten Quick Tips for Deep Learning in Biology

Scripts to download genomes from the NCBI FTP servers

🎯 Human transcription factor target genes.

BWK awk modified for biological data

Genome assembly evaluation tool

Tools to process and analyze deep sequencing data.

micca - MICrobial Community Analysis

MMseqs2: ultra fast and sensitive search and clustering suite

Cuneiform distributed programming language

d3 library to build circular graphs

Ploidy agnostic phasing pipeline and algorithm

Bioinformatics containers

Curated (meta)list of resources for Biology.

Tools for working with SAM/BAM data

A curated list of awesome bioinformatics software.

A repository for setting up a RNAseq workflow

For live demo, see http://lh3lh3.users.sourceforge.net/bioseq.shtml

The Microbiome Interpretable Temporal Rule Engine

Phylogenetic trees in Julia

Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

🚦 Run Picard on BAM files and collate 90 metrics into one file.

My own tools code for NGS data analysis (Next Generation Sequencing)

Computational Analysis of Novel Drug Opportunities

List of tools and resources related to the 10x Genomics GEMCode/Chromium system