372 Open source projects that are alternatives of or similar to indelope

De novo genome assembly and multisample variant calling

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A fast tool for hybrid genome assembly of long and short reads

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Complex structural variant detection from WGS data

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De novo assembly based variant calling pipeline for Illumina short reads

annotate a VCF with other VCFs/BEDs/tabixed files

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Efficient variant-call data storage and retrieval library using the TileDB storage library.

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Highly performant data storage in C++ for importing, querying and transforming variant data with C/C++/Java/Spark bindings. Used in gatk4.

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cython + htslib == fast VCF and BCF processing

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use the noise

simple viewer for variant call format using htslib

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Nextflow basic tutorial for newbie users

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Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

Numerical Encoding for Human Genetic Variants

calcardbackup: moved to https://codeberg.org/BernieO/calcardbackup

A library for manipulating bioinformatics sequencing formats in Apache Spark

tools for reading, writing, merging, and remapping SNPs

Terminal dashboards for Nim

Identify phage regions in bacterial genomes for masking purposes

Improve the quality of a denovo assembly by scaffolding and gap filling

Lightweight Self-Documenting Design by Contract Programming and Security Hardened mode.

TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C

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Nim utilities for advanced CPU operations: CPU identification, ISA extension detection, bindings to assorted intrinsics

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simplified searching, fetching, and parsing records from NCBI using their E-utilities interface

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Command line utility for manipulating Illumina-generated FastQ files.

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