424 Open source projects that are alternatives of or similar to interARTIC

A fast tool for hybrid genome assembly of long and short reads

Examples to get started with IBM Functional Genomics Platform

Predict plasmids from uncorrected long read data

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

Created with CodeSandbox

Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.

Predict AMPs in (meta)genomes and peptides

Visualize and compare COVID 19 growth rates of different countries

Scraping Germany's local districts websites for newer corona-case-numbers!

Interactive assembly and analysis of RAD-seq data sets

Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/

Tools for analyzing 10X Genomics data

Learn interpretable computational phenotyping models from k-merized genomic data

MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.

TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.

find large indels (in the blind spot between GATK/freebayes and SV callers)

Awesome list of COVID19 resources

Ultra-deep search for novel viruses

Long read / genome alignment software

Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data

Repository for the backend analytics

Nanopore demultiplexing, QC and alignment pipeline

Live COVID-19 Statistics.

A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using coalescent and concatenation approaches

Recover Cologne Api, kneipen kontakt tracer. recover provides localities a privacy-compliant, safe, and easy way for their guests to check in. See https://www.recoverapp.de/ for more details.

Stream Information & Example Applications for Processing JHU and CovidTracking.com COVID-19 data available as streams over Solace

VBZ compression plugin for nanopore signal data

COVID-19 World update with data Visualization (Include Indonesia cases)

A package for designing activity-informed nucleic acid diagnostics for viruses.

Monorepo with JBrowse 2 web, JBrowse 2 desktop, the JB core package, and core plugins. To customize behaviors, write an in-house plugin.

📈 Track COVID-19 (2019 novel Coronavirus) statistics via the command line.

mgatk: mitochondrial genome analysis toolkit

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Clustering scRNAseq by genotypes

Resource of human chromosome schematics & images

Bluetooth ble beacon beamer and scanner for tracing corona virus infected person similar to Trace Together app

A fast, scalable, and accurate local ancestry method.

Frontend of the video calling platform iorestoacasa.work

A tool to plot significant regions of GWAS

Repository for Global.health: a data science initiative to enable rapid sharing of trusted and open public health data to advance the response to infectious diseases.

Mapping 2019-nCoV (Official source): https://systems.jhu.edu/research/public-health/ncov/

Open Source CoronaTrackingTool developed by the University of Applied Sciences Mannheim

A tiny and small program to crawler and analyze outbreak of COVID-19 in world and every country using PHP.

Grammar of Scalable Linked Interactive Nucleotide Graphics

The app enables tracking coivid vaccine availability and automatically book a vaccination slot. This is based on Cowin API and supports the recently added Captcha code of Cowin.

Image-based COVID-19 diagnosis. Links to software, data, and other resources.

A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains

The Front-End of CovIndia.com [SHUTDOWN]

Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer

A proof of concept of RNAseq pipeline

Command line utility for manipulating Illumina-generated FastQ files.

🔬 De novo assembly of nanopore reads using nextflow

Africa open COVID-19 data working group

A tool to identify, orient, trim and rescue full length cDNA reads

Deprecated - A fast API service for retrieving day to day stats about Coronavirus(COVID-19, SARS-CoV-2) outbreak in Kerala(India).

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

Daily COVID-19 statistics by country, region, and city

An R framework for phylostratigraphy

Reference-based transcript discovery from long RNA read