424 Open source projects that are alternatives of or similar to interARTIC

Check for Vaccine availability in a district at specified intervals and sounds a loud alarm when a slot is available.

Ultra-fast and memory-efficient (meta-)genome assembler

Rank 1 / 216

Efficient pythonic random access to fasta subsequences

Automated Python Script to retrieve vaccine slots availability and get notified when a slot is available.

An open source platform for managing and analyzing biomedical big data

WebAssembly modules for genomics

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

a pileup library that embraces the huge

annotate a VCF with other VCFs/BEDs/tabixed files

Clustering scRNAseq by genotypes

Fast genome-wide functional annotation through orthology assignment

A curated list of awesome nanopore analysis tools.

Example client programs for Saphetor's VarSome annotation API

🦠 Scan, parse and verify HCERT compliant government-issued COVID-19 passes.

Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI

Finds SNP sites from a multi-FASTA alignment file

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

Resource of human chromosome schematics & images

BACNET is a Java based platform to develop website for multi-omics analysis

Performs memory-efficient reservoir sampling on very large input files delimited by newlines

A fast 23andMe genome text file parser, now superseded by arv

Contenu d'entrainement d'un Bot Covid19 pour Watson Assistant en français et allemand.

CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies

Real-time corona-virus tracker of Bangladesh 🇧🇩 which includes latest updates, data visualization, public awareness from WHO and some advice to aware people. 🥰❤

Inference of switch-like differential expression along single-cell trajectories

Bluetooth ble beacon beamer and scanner for tracing corona virus infected person similar to Trace Together app

Home of the Genomic Feature and Variation Ontology (GFVO)

Phage-Host Interaction Search Tool

Introduction to Cloud Computing for Genomics

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation

simuG: a general-purpose genome simulator

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

A fast, scalable, and accurate local ancestry method.

Provide R access to the NCI Genomic Data Commons portal.

Genome-wide imputation pipeline

Genetic Map Comparison

Transcripts annotation and GO enrichment Fisher tests

Bystro genetic analysis (annotation, filtering, statistics)

Easy genetic ancestry predictions in Python

Version 2.1.0 released

Frontend of the video calling platform iorestoacasa.work

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

recover provides localities a privacy-compliant, safe, and easy way for their guests to check in. See https://www.recoverapp.de/ for more details.

(WIP) best-practices workflow for rare disease

Pipeline for annotating genomes using long read transcriptomics data with pinfish

Complex structural variant detection from WGS data

A CLI for getting covid-19 coronavirus status of your district or state or country at lightning speed right on your terminal built using https://api.covid19india.org.

Fast hash function for DNA sequences

A tool to plot significant regions of GWAS

Python package and CLI for whole-genome duplication related analyses

Reference-based transcript discovery from long RNA read

Repackaging the Ministry of Health's Covid-19 data

React Native Library For Contact Tracing Over BLE (Bluetooth Low Energy) To Fight COVID-19 Pandemic

A list of high quality open datasets for COVID-19 data analysis

Mobile application of Covid19 Cuba Data project implemented with Flutter

WNUT-2020 Task 2: Identification of informative COVID-19 English Tweets

A bioinformatics API and web-app to integrate multi-omics datasets & interface with public databases.

NGLess: NGS with less work