52 Open source projects that are alternatives of or similar to libdna

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.

Binomica Public Repository for Biological Parts

A package for designing activity-informed nucleic acid diagnostics for viruses.

tools for reading, writing, merging, and remapping SNPs

Numerical Encoding for Human Genetic Variants

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates

Ultrafast sequence typing and gene detection from NGS raw reads

A fast 23andMe DNA parser and inferrer for Python

Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets

Understand DNA structure and how machine learning can be used to work with DNA sequence data.

CoRA Docs

programs and scripts, mainly python, for analyses related to nucleic or protein sequences

A Framework for Coalescent Simulation in R

waka waka

Official git repository for Biopython (originally converted from CVS)

A Java API for high-throughput sequencing data (HTS) formats.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

De novo assembly from Oxford Nanopore reads.

Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

UGENE is free open-source cross-platform bioinformatics software

A collection of scripts and notes related to genomics and bioinformatics

ABRA2

Analysis pipelines for sequencing data

Official code repository for GATK versions 4 and up

Predicting Future Influenza Virus Sequences with Machine Learning

😴 📂 Create and Query a Local Copy of GenBank in R

Data intensive science for everyone.

tools for working with genome variation graphs

Python and C++ code for reading and writing genomics data.

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

3d engine implementation in DNA code!

16,432 Free Yara rules created by

Efficient pythonic random access to fasta subsequences

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

A fast 23andMe genome text file parser, now superseded by arv

NexusTK DAT Object Viewer

A curated list of awesome bioinformatics software.

DNA sequence viewer supporting custom, GenBank, FASTA, NCBI accession, and iGEM input.

Fast and flexible ORF finder

A package for designing compact and comprehensive capture probe sets.

A python wrapper for the benchling api

Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences

COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)

Precision HLA typing from next-generation sequencing data

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

Visualizing DNA Sequences via Javascript

minimalistic nucleic acid folding

A Go package for engineering organisms.

Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.