26 Open source projects that are alternatives of or similar to odemis

Config and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.

Official Python implementation of the 'Sparse deconvolution'-v0.3.0

Code for my master's thesis. Instance segmentation of fluorescence microscopy images with deep learning.

A collection of tools for painting super-resolution images

ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.

Automated 3D brain registration with support for multiple species and atlases.

No description or website provided.

Fast and Accurate 3D PSF Computation for Fluorescence Microscopy

Single-cell fluorescence microscopy data analysis

A convex 3D deconvolution algorithm for low photon count fluorescence imaging

Java (ImageJ/Fiji) software package for 3D deconvolution microscopy

Simple demo of structured illumination microscopy image fusion via Richardson-Lucy deconvolution

A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/remote_refocus/

Manual, source-code and binaries for the NanoJ-Fluidics project

An interactive image processing program for biologists written in Python.

🔬🍸 Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ

A lightweight python module to interact with atlases for systems neuroscience

Gaussian processes and Bayesian optimization for images and hyperspectral data

Deep and Machine Learning for Microscopy

Lattice light-sheet post-processing utility.

Multiple file format reading directly into napari using pure Python

Automated 3D cell detection and registration of whole-brain images

Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.

native Python dataclasses for the OME data model

Python samples for Micro-Manager: image acquisition and microscope control system

Axon/Myelin segmentation using Deep Learning