100 Open source projects that are alternatives of or similar to polyply_1.0

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences

De novo assembly from Oxford Nanopore reads.

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

🚀 Cross-platform transparent benchmarks for HTTP/2 Web Servers at 2020-2023

DNA sequence viewer supporting custom, GenBank, FASTA, NCBI accession, and iGEM input.

CoRA Docs

Visualizing DNA Sequences via Javascript

ABRA2

tools for working with genome variation graphs

Binomica Public Repository for Biological Parts

Markdown Crash Course. Learn Markdown language on a simple way.

16,432 Free Yara rules created by

Learn Markdown. Persian and English version.

NexusTK DAT Object Viewer

A Java API for high-throughput sequencing data (HTS) formats.

A package for designing compact and comprehensive capture probe sets.

Cassandra is a Monte Carlo package to conduct atomistic simulations.

Precision HLA typing from next-generation sequencing data

UGENE is free open-source cross-platform bioinformatics software

A Go package for engineering organisms.

WhatsApp Bot Using Baileys Library

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

Official code repository for GATK versions 4 and up

Data intensive science for everyone.

A package for designing activity-informed nucleic acid diagnostics for viruses.

A Framework for Coalescent Simulation in R

Python and C++ code for reading and writing genomics data.

Understand DNA structure and how machine learning can be used to work with DNA sequence data.

3d engine implementation in DNA code!

waka waka

Efficient pythonic random access to fasta subsequences

Angular (>=2) integration for Showdown

A fast 23andMe genome text file parser, now superseded by arv

Official git repository for Biopython (originally converted from CVS)

A curated list of awesome bioinformatics software.

Generates tabs for consecutive markdown code blocks

Fast and flexible ORF finder

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

A python wrapper for the benchling api

Safety first markdown rendering

COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)

Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

NequIP is a code for building E(3)-equivariant interatomic potentials

minimalistic nucleic acid folding

A collection of scripts and notes related to genomics and bioinformatics

Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files

A fast 23andMe DNA parser and inferrer for Python

♥ Essential Functions for DNA Manipulation

Analysis pipelines for sequencing data

G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.

programs and scripts, mainly python, for analyses related to nucleic or protein sequences

Predicting Future Influenza Virus Sequences with Machine Learning

Ultrafast sequence typing and gene detection from NGS raw reads

The last Markdown editor, ever.

Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets

Documentation for dahliaOS

😴 📂 Create and Query a Local Copy of GenBank in R