RamaNetPreforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure
Stars: ✭ 41 (-50%)
hPDBPDB parser in Haskell
Stars: ✭ 20 (-75.61%)
MolArtMOLeculAR structure annoTator
Stars: ✭ 25 (-69.51%)
VSCoding-SequenceVSCode Extension for interactively visualising protein structure data in the editor
Stars: ✭ 41 (-50%)
chimera-frameworkSimple Language Agnostic Framework for Stand Alone and Distributed Computing
Stars: ✭ 17 (-79.27%)
parapredParatope Prediction using Deep Learning
Stars: ✭ 49 (-40.24%)
RmsdCalculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format
Stars: ✭ 215 (+162.2%)
FakepdbTool for PDB generation from IDA Pro database
Stars: ✭ 186 (+126.83%)
doSimplest way to manage asynchronicity
Stars: ✭ 33 (-59.76%)
mmtermView proteins and trajectories in the terminal
Stars: ✭ 87 (+6.1%)
PudbFull-screen console debugger for Python
Stars: ✭ 2,267 (+2664.63%)
hd-addressAn extensible HD Wallet Address management utility
Stars: ✭ 22 (-73.17%)
plmcInference of couplings in proteins and RNAs from sequence variation
Stars: ✭ 85 (+3.66%)
pytorch-rgnRecurrent Geometric Network in Pytorch
Stars: ✭ 28 (-65.85%)
DMPfoldDe novo protein structure prediction using iteratively predicted structural constraints
Stars: ✭ 52 (-36.59%)
VimpdbPdb and Vim integration
Stars: ✭ 188 (+129.27%)
Bio3DView.jlA Julia package to view macromolecular structures in the REPL, in a Jupyter notebook/JupyterLab or in Pluto
Stars: ✭ 30 (-63.41%)
Pdb CheatsheetA cheatsheet for the Python Debugger (pdb)
Stars: ✭ 171 (+108.54%)
mmtfThe specification of the MMTF format for biological structures
Stars: ✭ 40 (-51.22%)
PdbA parser for Microsoft PDB (Program Database) debugging information
Stars: ✭ 156 (+90.24%)
Pdbrpdb + Rich library
Stars: ✭ 96 (+17.07%)
Pytest PudbPytest PuDB debugger integration
Stars: ✭ 45 (-45.12%)
nopdbNoPdb: Non-interactive Python Debugger
Stars: ✭ 67 (-18.29%)
mmtf-sparkMethods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
Stars: ✭ 20 (-75.61%)
Ihm Dictionary📖 mmCIF support for hybrid/integrative models
Stars: ✭ 12 (-85.37%)
SQLCallStackResolverUtility to resolve SQL Server callstacks to their correct symbolic form using just PDBs and without a dump file
Stars: ✭ 55 (-32.93%)
blockchain-in-nodeThis is an afternoon-project, a blockchain built in node, supporting PoW.
Stars: ✭ 20 (-75.61%)
symreader-converterConverts between Windows PDB and Portable PDB formats.
Stars: ✭ 50 (-39.02%)
BlinkA tool which allows you to edit source code of any MSVC C++ project live at runtime
Stars: ✭ 808 (+885.37%)
woodpeckerwoodpecker http client for Android
Stars: ✭ 17 (-79.27%)
Uni-FoldAn open-source platform for developing protein models beyond AlphaFold.
Stars: ✭ 227 (+176.83%)
lightflowA tiny Promise-inspired control flow library for browser and Node.js.
Stars: ✭ 29 (-64.63%)
DucibleA tool to make Windows builds reproducible.
Stars: ✭ 211 (+157.32%)
tape-neurips2019Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology. (DEPRECATED)
Stars: ✭ 117 (+42.68%)
PdbripperPDBRipper is a utility for extract an information from PDB-files.
Stars: ✭ 173 (+110.98%)
ensparaModeling molecular ensembles with scalable data structures and parallel computing
Stars: ✭ 28 (-65.85%)
Ilspy.NET Decompiler with support for PDB generation, ReadyToRun, Metadata (&more) - cross-platform!
Stars: ✭ 14,011 (+16986.59%)
dsspApplication to assign secondary structure to proteins
Stars: ✭ 56 (-31.71%)
BiosyntaxSyntax highlighting for computational biology
Stars: ✭ 164 (+100%)
sidechainnetAn all-atom protein structure dataset for machine learning.
Stars: ✭ 227 (+176.83%)
PypdbA Python API for the RCSB Protein Data Bank (PDB)
Stars: ✭ 139 (+69.51%)
DoubleStarA personalized/enhanced re-creation of the Darkhotel "Double Star" APT exploit chain with a focus on Windows 8.1 and mixed with some of my own techniques
Stars: ✭ 140 (+70.73%)
McmdMonte Carlo and Molecular Dynamics Simulation Package
Stars: ✭ 52 (-36.59%)
Jupyter DockJupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.
Stars: ✭ 179 (+118.29%)
DbgSymGrabberJust another tool to download specify Symbol (.pdb) files
Stars: ✭ 35 (-57.32%)
Gtoolsgevent tools
Stars: ✭ 7 (-91.46%)
pdb-toolsA dependency-free cross-platform swiss army knife for PDB files.
Stars: ✭ 240 (+192.68%)
IterTools.jlCommon functional iterator patterns
Stars: ✭ 124 (+51.22%)
Pdb TutorialA simple tutorial about effectively using pdb
Stars: ✭ 720 (+778.05%)
Pdbpppdb++, a drop-in replacement for pdb (the Python debugger)
Stars: ✭ 693 (+745.12%)
PancakeTokenSniperBSC BNB Pancake token sniper, buy, take profit and rug check
Stars: ✭ 184 (+124.39%)
object shadowThe Shadow of a Ruby Object lets you See and Manipulate its Instance Variables and Methods
Stars: ✭ 26 (-68.29%)
cTPnetcTPnet Package
Stars: ✭ 18 (-78.05%)
pdbfetchFetch PDB symbols directly from Microsoft's symbol servers
Stars: ✭ 33 (-59.76%)