137 Open source projects that are alternatives of or similar to Pyabf

One-Shot Object Appearance Learning using Spiking Neural Networks

Nuerapse simulations for SNNs

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A toolbox for inferring spikes from calcium traces.

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

Python package for covariance matrices manipulation and Biosignal classification with application in Brain Computer interface

Multi-modal Image Registration And Connectivity anaLysis

A curated list of awesome neuroscience libraries, software and any content related to the domain.

A virtual optogenetics laboratory

A table containing imaging analysis tools for biology, with a focus on calcium imaging.

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MATLAB/Octave GIfTI Library

EyeLoop is a Python 3-based eye-tracker tailored specifically to dynamic, closed-loop experiments on consumer-grade hardware.

PyoMyo - Python Opensource Myo armband library

ONI-compatible hardware, firmware, and host APIs for advanced neuroscience experiments.

Flow-based synchronized parallel DAQ from diverse sources and flexible control for neuroscience experiments

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For running psychology and neuroscience experiments

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The open source toolbox for reproducible diffusion MRI-based microstructure estimation

📊 Gene expression in neuroexpresso database

Brian is a free, open source simulator for spiking neural networks.

🔧🧠 MEEGkit: MEG & EEG processing toolkit in Python 🧠🔧

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

Example with Cortex V2 API

Python 3 library for analysis of neuroanatomical data

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Just Another Tool for Online Studies

Preparatory Materials, Self-guided Learning, and Project Management for Neuromatch Academy activities

Helping researchers in routine procedures for data collection

A Python Toolbox for Statistics and Neurophysiological Signal Processing (EEG, EDA, ECG, EMG...).

Resources for data driven neuroscientists.

Temporal Network Tools

A lightweight python module to interact with atlases for systems neuroscience

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medical image visualization library and development toolkit

Automated mouse atlas propagation

AntroPy: entropy and complexity of (EEG) time-series in Python

A Python-based simulation framework for bionic vision

Automated 3D cell detection and registration of whole-brain images

PyTorch Connectomics: segmentation toolbox for EM connectomics

A package for data-driven validation of neuron and ion channel models using SciUnit

Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data

All things Miniscope v4

A Python library for creating and simulating large-scale brain models

Keras for Science

Core methods and structures for neuroscience research in Julia.

Extended edit similarity measurement for high dimensional discrete-time series signal (e.g., multi-unit spike-train).

A motor unit based model of skeletal muscle and fatigue

Code Generation Framework For NEURON MODeling Language

Spiking neural network system

Software platform for clinical neuroimaging studies

The MATLAB toolbox for MEG, EEG and iEEG analysis

Segmentation of 3D shapes in a common anatomical space

Fast and scalable spike sorting in python

Real-time position tracker for behavioral research

The Tensorflow code and a DeepMind Lab wrapper for my article "Meta-Reinforcement Learning" on FloydHub.

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

Systems Neuroscience Computing in Python: user-friendly analysis of large-scale electrophysiology data