398 Open source projects that are alternatives of or similar to Pysradb

A curated list of resources for learning bioinformatics.

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

Proof-of-concept seq-to-graph mapper and graph generator

code for reading and processing Allen Institute for Brain Science data

Intuitive local web frontend for the BLAST bioinformatics tool

A powerful open source data warehouse system

Python package for graph neural networks in chemistry and biology

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

RAxML Next Generation: faster, easier-to-use and more flexible

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

GenomeTools genome analysis system.

A genome browser that shows long reads and complex variants better

Protein Graph Library

Deep learning infrastructure for bioinformatics

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Toolset for SV simulation, comparison and filtering

Ten Quick Tips for Deep Learning in Biology

Reads simulator

Genome assembly evaluation tool

Rapid large-scale prokaryote pan genome analysis

Cuneiform distributed programming language

goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

Curated (meta)list of resources for Biology.

Annotated data.

A repository for setting up a RNAseq workflow

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

Tools for working with genomic and high throughput sequencing data.

Syntax highlighting for computational biology

Fast Reference-Guided Scaffolding of Genome Assembly Contigs. RagTag, the successor to RaGOO, is now available here: https://github.com/malonge/RagTag

The sources of the openSNP website

Bioconductor cheat sheet

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

BioGrakn Knowledge Graph

Next generation sequencing reads de novo assembler.

MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.

R package for analyzing single-cell RNA-seq data

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database