468 Open source projects that are alternatives of or similar to Qqman

Easily source publicly available data on derivatives

Example client programs for Saphetor's VarSome annotation API

Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/

All data sets required for the examples and exercises in the book "Forecasting: principles and practice" (3rd ed, 2020) by Rob J Hyndman and George Athanasopoulos <http://OTexts.org/fpp3/>. All packages required to run the examples are also loaded.

Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data

Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI

Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer

A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains

De novo genome assembly and multisample variant calling

Command line utility for manipulating Illumina-generated FastQ files.

Relational Operators for Intervals

Development version of vioplot R package (CRAN maintainer)

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

R package for interacting with the SEC's EDGAR filing search and retrieval system

R package to interface with OpenML

Multilocus sequence typing by blast using the schemes from PubMLST

De novo assembly based variant calling pipeline for Illumina short reads

🐳 Bio-dockers: dockerized bioinformatic tools

RADseq Data Exploration, Manipulation and Visualization using R

Numerical Encoding for Human Genetic Variants

Import Climate Indices into R

An updated version of qwraps with a focus on flexibility and general purpose. These functions are helpful for extracting and formatting results from R into .Rnw or .Rmd files. Additional functions for routine work such as extracting results from regression models or finding sensitivity and specificity.

Wrapper for the Intro.js library

Spark VCF data source implementation for Dataframes

Earl Grey: A fully automated TE curation and annotation pipeline

simplified searching, fetching, and parsing records from NCBI using their E-utilities interface

Nanosecond Resolution Time Functionality for R

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

CRAN Task View: Empirical Finance

XPtr Add-Ons for 'Rcpp'

Easy Handling Discrete Time Markov Chains

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

demography package for R

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

R Package: Parallel Distance Matrix Computation using Multiple Threads

Python-based UCSC genome browser snapshot-taker and gallery-maker

Miscellaneous R functions

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

variant expressions, annotation, and filtering for great good.

A library for manipulating bioinformatics sequencing formats in Apache Spark

CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies

Forward-time simulation in Python using fwdpp

Examples of using Rcpp to interface R and C++

phenol: Phenotype ontology library

Encode Categorical Features

Explore gnomAD datasets on the web

Bayesian genotyper for structural variants

A fast tool for hybrid genome assembly of long and short reads

♛ Chess package for R

Ultrafast sequence typing and gene detection from NGS raw reads

A versatile pairwise aligner for genomic and spliced nucleotide sequences

CRAN OpenData Task View

A cool place to store your Hi-C

Machine Learning in R

Add More Interactivity to htmlwidgets

AQUAS TF and histone ChIP-seq pipeline

List of tools and resources related to the 10x Genomics GEMCode/Chromium system

igv.js server and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"

Calculating Marginal Effects and Levels with Errors Using the Delta Method

⛔ ARCHIVED ⛔