All Projects → Quagmir → Similar Projects or Alternatives

430 Open source projects that are alternatives of or similar to Quagmir

Rnaseq Workflow
A repository for setting up a RNAseq workflow
Stars: ✭ 170 (+1788.89%)
Mutual labels:  pipeline, sequencing
Ugene
UGENE is free open-source cross-platform bioinformatics software
Stars: ✭ 112 (+1144.44%)
Mutual labels:  pipeline, sequencing
Sns
Analysis pipelines for sequencing data
Stars: ✭ 43 (+377.78%)
Mutual labels:  pipeline, sequencing
Galaxy
Data intensive science for everyone.
Stars: ✭ 812 (+8922.22%)
Mutual labels:  pipeline, sequencing
RNASeq
RNASeq pipeline
Stars: ✭ 30 (+233.33%)
Mutual labels:  pipeline, sequencing
Kashti
Kashti is a dashboard for your Brigade pipelines.
Stars: ✭ 370 (+4011.11%)
Mutual labels:  pipeline
Ttyplot
a realtime plotting utility for terminal/console with data input from stdin
Stars: ✭ 532 (+5811.11%)
Mutual labels:  pipeline
Rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Stars: ✭ 305 (+3288.89%)
Mutual labels:  pipeline
Open Solution Mapping Challenge
Open solution to the Mapping Challenge 🌎
Stars: ✭ 291 (+3133.33%)
Mutual labels:  pipeline
Syntax sugar python
A library adding some anti-Pythonic syntatic sugar to Python
Stars: ✭ 721 (+7911.11%)
Mutual labels:  pipeline
Dashboard
A dashboard for Tekton!
Stars: ✭ 448 (+4877.78%)
Mutual labels:  pipeline
Dgsh
Shell supporting pipelines to and from multiple processes
Stars: ✭ 261 (+2800%)
Mutual labels:  pipeline
Mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Stars: ✭ 376 (+4077.78%)
Mutual labels:  sequencing
Pdpipe
Easy pipelines for pandas DataFrames.
Stars: ✭ 590 (+6455.56%)
Mutual labels:  pipeline
Pipelines
An experimental programming language for data flow
Stars: ✭ 354 (+3833.33%)
Mutual labels:  pipeline
Pipeline
A cloud-native Pipeline resource.
Stars: ✭ 6,751 (+74911.11%)
Mutual labels:  pipeline
Targets
Function-oriented Make-like declarative workflows for R
Stars: ✭ 293 (+3155.56%)
Mutual labels:  pipeline
Gaia
Build powerful pipelines in any programming language.
Stars: ✭ 4,534 (+50277.78%)
Mutual labels:  pipeline
Letters
A tiny debugging library for Ruby
Stars: ✭ 273 (+2933.33%)
Mutual labels:  pipeline
Cookiecutter
DEPRECIATED! Please use nf-core/tools instead
Stars: ✭ 18 (+100%)
Mutual labels:  pipeline
pyrealtime
Realtime data processing and plotting pipelines in Python
Stars: ✭ 62 (+588.89%)
Mutual labels:  pipeline
Papermill
📚 Parameterize, execute, and analyze notebooks
Stars: ✭ 4,458 (+49433.33%)
Mutual labels:  pipeline
cli-property-manager
Use this Property Manager CLI to automate Akamai property changes and deployments across many environments.
Stars: ✭ 22 (+144.44%)
Mutual labels:  pipeline
gff3toembl
Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
Stars: ✭ 27 (+200%)
Mutual labels:  sequencing
Lambdacd
a library to define a continuous delivery pipeline in code
Stars: ✭ 655 (+7177.78%)
Mutual labels:  pipeline
Great expectations
Always know what to expect from your data.
Stars: ✭ 5,808 (+64433.33%)
Mutual labels:  pipeline
godot-exporter
Godot Engine Automation Pipeline Android – iOS – Linux – MacOS – Windows – HTML5 – Itch.io.
Stars: ✭ 54 (+500%)
Mutual labels:  pipeline
Neuraxle
A Sklearn-like Framework for Hyperparameter Tuning and AutoML in Deep Learning projects. Finally have the right abstractions and design patterns to properly do AutoML. Let your pipeline steps have hyperparameter spaces. Enable checkpoints to cut duplicate calculations. Go from research to production environment easily.
Stars: ✭ 377 (+4088.89%)
Mutual labels:  pipeline
Go Streams
A lightweight stream processing library for Go
Stars: ✭ 615 (+6733.33%)
Mutual labels:  pipeline
Piper
piper - a distributed workflow engine
Stars: ✭ 374 (+4055.56%)
Mutual labels:  pipeline
Kedro
A Python framework for creating reproducible, maintainable and modular data science code.
Stars: ✭ 4,764 (+52833.33%)
Mutual labels:  pipeline
Proposal Pipeline Operator
A proposal for adding a useful pipe operator to JavaScript.
Stars: ✭ 5,899 (+65444.44%)
Mutual labels:  pipeline
Neural Pipeline
Neural networks training pipeline based on PyTorch
Stars: ✭ 315 (+3400%)
Mutual labels:  pipeline
Helmsman
highly-efficient & lightweight mutation signature matrix aggregation
Stars: ✭ 19 (+111.11%)
Mutual labels:  sequencing
Catalog
Catalog of shared Tasks and Pipelines.
Stars: ✭ 298 (+3211.11%)
Mutual labels:  pipeline
Ok
Elegant error/exception handling in Elixir, with result monads.
Stars: ✭ 517 (+5644.44%)
Mutual labels:  pipeline
Production Level Deep Learning
A guideline for building practical production-level deep learning systems to be deployed in real world applications.
Stars: ✭ 3,358 (+37211.11%)
Mutual labels:  pipeline
Toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
Stars: ✭ 733 (+8044.44%)
Mutual labels:  pipeline
Sparkflow
Easy to use library to bring Tensorflow on Apache Spark
Stars: ✭ 282 (+3033.33%)
Mutual labels:  pipeline
Fetch
Simple & Efficient data access for Scala and Scala.js
Stars: ✭ 453 (+4933.33%)
Mutual labels:  sequencing
Datavec
ETL Library for Machine Learning - data pipelines, data munging and wrangling
Stars: ✭ 272 (+2922.22%)
Mutual labels:  pipeline
Vector
A reliable, high-performance tool for building observability data pipelines.
Stars: ✭ 8,736 (+96966.67%)
Mutual labels:  pipeline
kedro
A Python framework for creating reproducible, maintainable and modular data science code.
Stars: ✭ 6,068 (+67322.22%)
Mutual labels:  pipeline
Pipeline
Pipeline is a package to build multi-staged concurrent workflows with a centralized logging output.
Stars: ✭ 433 (+4711.11%)
Mutual labels:  pipeline
TACTIC-Handler
PySide based TACTIC client for maya, nuke, 3dsmax, houdini, etc
Stars: ✭ 67 (+644.44%)
Mutual labels:  pipeline
Aws Boilerplate
Opinionated full stack web app's boilerplate, ready to be deployed to AWS platform.
Stars: ✭ 682 (+7477.78%)
Mutual labels:  pipeline
ploio
Safe, Reliable, and Fast Production Deployments for Kubernetes
Stars: ✭ 11 (+22.22%)
Mutual labels:  pipeline
Rush
A cross-platform command-line tool for executing jobs in parallel
Stars: ✭ 421 (+4577.78%)
Mutual labels:  pipeline
latent-semantic-analysis
Pipeline for training LSA models using Scikit-Learn.
Stars: ✭ 20 (+122.22%)
Mutual labels:  pipeline
Phila Airflow
Stars: ✭ 16 (+77.78%)
Mutual labels:  pipeline
Serving
A flexible, high-performance carrier for machine learning models(『飞桨』服务化部署框架)
Stars: ✭ 403 (+4377.78%)
Mutual labels:  pipeline
basin
Basin is a visual programming editor for building Spark and PySpark pipelines. Easily build, debug, and deploy complex ETL pipelines from your browser
Stars: ✭ 25 (+177.78%)
Mutual labels:  pipeline
pheniqs
Fast and accurate sequence demultiplexing
Stars: ✭ 14 (+55.56%)
Mutual labels:  sequencing
ctdna-pipeline
A simplified pipeline for ctDNA sequencing data analysis
Stars: ✭ 29 (+222.22%)
Mutual labels:  pipeline
Bk Sops
蓝鲸智云标准运维(SOPS)
Stars: ✭ 632 (+6922.22%)
Mutual labels:  pipeline
Open Solution Home Credit
Open solution to the Home Credit Default Risk challenge 🏡
Stars: ✭ 397 (+4311.11%)
Mutual labels:  pipeline
re-mote
Re-mote operations using SSH and Re-gent
Stars: ✭ 61 (+577.78%)
Mutual labels:  pipeline
pipeline-editor
Cloud Pipelines Editor is a web app that allows the users to build and run Machine Learning pipelines without having to set up development environment.
Stars: ✭ 22 (+144.44%)
Mutual labels:  pipeline
Jx
Jenkins X provides automated CI+CD for Kubernetes with Preview Environments on Pull Requests using Cloud Native pipelines from Tekton
Stars: ✭ 4,041 (+44800%)
Mutual labels:  pipeline
Brunch
🍴 Web applications made easy. Since 2011.
Stars: ✭ 6,801 (+75466.67%)
Mutual labels:  pipeline
1-60 of 430 similar projects