Rnaseq WorkflowA repository for setting up a RNAseq workflow
Stars: ✭ 170 (+1788.89%)
UgeneUGENE is free open-source cross-platform bioinformatics software
Stars: ✭ 112 (+1144.44%)
SnsAnalysis pipelines for sequencing data
Stars: ✭ 43 (+377.78%)
GalaxyData intensive science for everyone.
Stars: ✭ 812 (+8922.22%)
RNASeqRNASeq pipeline
Stars: ✭ 30 (+233.33%)
KashtiKashti is a dashboard for your Brigade pipelines.
Stars: ✭ 370 (+4011.11%)
Ttyplota realtime plotting utility for terminal/console with data input from stdin
Stars: ✭ 532 (+5811.11%)
RnaseqRNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Stars: ✭ 305 (+3288.89%)
Syntax sugar pythonA library adding some anti-Pythonic syntatic sugar to Python
Stars: ✭ 721 (+7911.11%)
DashboardA dashboard for Tekton!
Stars: ✭ 448 (+4877.78%)
DgshShell supporting pipelines to and from multiple processes
Stars: ✭ 261 (+2800%)
Mosdepthfast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Stars: ✭ 376 (+4077.78%)
PdpipeEasy pipelines for pandas DataFrames.
Stars: ✭ 590 (+6455.56%)
PipelinesAn experimental programming language for data flow
Stars: ✭ 354 (+3833.33%)
PipelineA cloud-native Pipeline resource.
Stars: ✭ 6,751 (+74911.11%)
TargetsFunction-oriented Make-like declarative workflows for R
Stars: ✭ 293 (+3155.56%)
GaiaBuild powerful pipelines in any programming language.
Stars: ✭ 4,534 (+50277.78%)
LettersA tiny debugging library for Ruby
Stars: ✭ 273 (+2933.33%)
CookiecutterDEPRECIATED! Please use nf-core/tools instead
Stars: ✭ 18 (+100%)
pyrealtimeRealtime data processing and plotting pipelines in Python
Stars: ✭ 62 (+588.89%)
Papermill📚 Parameterize, execute, and analyze notebooks
Stars: ✭ 4,458 (+49433.33%)
cli-property-managerUse this Property Manager CLI to automate Akamai property changes and deployments across many environments.
Stars: ✭ 22 (+144.44%)
gff3toemblConverts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
Stars: ✭ 27 (+200%)
Lambdacda library to define a continuous delivery pipeline in code
Stars: ✭ 655 (+7177.78%)
godot-exporterGodot Engine Automation Pipeline Android – iOS – Linux – MacOS – Windows – HTML5 – Itch.io.
Stars: ✭ 54 (+500%)
NeuraxleA Sklearn-like Framework for Hyperparameter Tuning and AutoML in Deep Learning projects. Finally have the right abstractions and design patterns to properly do AutoML. Let your pipeline steps have hyperparameter spaces. Enable checkpoints to cut duplicate calculations. Go from research to production environment easily.
Stars: ✭ 377 (+4088.89%)
Go StreamsA lightweight stream processing library for Go
Stars: ✭ 615 (+6733.33%)
Piperpiper - a distributed workflow engine
Stars: ✭ 374 (+4055.56%)
KedroA Python framework for creating reproducible, maintainable and modular data science code.
Stars: ✭ 4,764 (+52833.33%)
Neural PipelineNeural networks training pipeline based on PyTorch
Stars: ✭ 315 (+3400%)
Helmsmanhighly-efficient & lightweight mutation signature matrix aggregation
Stars: ✭ 19 (+111.11%)
CatalogCatalog of shared Tasks and Pipelines.
Stars: ✭ 298 (+3211.11%)
OkElegant error/exception handling in Elixir, with result monads.
Stars: ✭ 517 (+5644.44%)
Production Level Deep LearningA guideline for building practical production-level deep learning systems to be deployed in real world applications.
Stars: ✭ 3,358 (+37211.11%)
ToilA scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
Stars: ✭ 733 (+8044.44%)
SparkflowEasy to use library to bring Tensorflow on Apache Spark
Stars: ✭ 282 (+3033.33%)
FetchSimple & Efficient data access for Scala and Scala.js
Stars: ✭ 453 (+4933.33%)
DatavecETL Library for Machine Learning - data pipelines, data munging and wrangling
Stars: ✭ 272 (+2922.22%)
VectorA reliable, high-performance tool for building observability data pipelines.
Stars: ✭ 8,736 (+96966.67%)
kedroA Python framework for creating reproducible, maintainable and modular data science code.
Stars: ✭ 6,068 (+67322.22%)
PipelinePipeline is a package to build multi-staged concurrent workflows with a centralized logging output.
Stars: ✭ 433 (+4711.11%)
TACTIC-HandlerPySide based TACTIC client for maya, nuke, 3dsmax, houdini, etc
Stars: ✭ 67 (+644.44%)
Aws BoilerplateOpinionated full stack web app's boilerplate, ready to be deployed to AWS platform.
Stars: ✭ 682 (+7477.78%)
ploioSafe, Reliable, and Fast Production Deployments for Kubernetes
Stars: ✭ 11 (+22.22%)
RushA cross-platform command-line tool for executing jobs in parallel
Stars: ✭ 421 (+4577.78%)
ServingA flexible, high-performance carrier for machine learning models(『飞桨』服务化部署框架)
Stars: ✭ 403 (+4377.78%)
basinBasin is a visual programming editor for building Spark and PySpark pipelines. Easily build, debug, and deploy complex ETL pipelines from your browser
Stars: ✭ 25 (+177.78%)
pheniqsFast and accurate sequence demultiplexing
Stars: ✭ 14 (+55.56%)
ctdna-pipelineA simplified pipeline for ctDNA sequencing data analysis
Stars: ✭ 29 (+222.22%)
Bk Sops蓝鲸智云标准运维(SOPS)
Stars: ✭ 632 (+6922.22%)
re-moteRe-mote operations using SSH and Re-gent
Stars: ✭ 61 (+577.78%)
pipeline-editorCloud Pipelines Editor is a web app that allows the users to build and run Machine Learning pipelines without having to set up development environment.
Stars: ✭ 22 (+144.44%)
JxJenkins X provides automated CI+CD for Kubernetes with Preview Environments on Pull Requests using Cloud Native pipelines from Tekton
Stars: ✭ 4,041 (+44800%)
Brunch🍴 Web applications made easy. Since 2011.
Stars: ✭ 6,801 (+75466.67%)