103 Open source projects that are alternatives of or similar to recount

Stickers for some Bioconductor packages - feel free to contribute and/or modify.

Conversion between scRNA-seq objects

This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

tidy processing of biological sequences in R

circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.

Bioconductor package for management of multi-assay data

Contribute Packages to Bioconductor

AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project

Create a cromphensive report of DEG list coming from any analysis of RNAseq data

Convert between AnnData and SingleCellExperiment

📚 RDocumentation provides an easy way to search the documentation for every version of every R package on CRAN and Bioconductor.

A R framework for pipeline benchmarking, with application to single-cell RNAseq

📚 R interface to the Bio-Formats library

Materials on the analysis of microarray expression data; focus on re-analysis of public data ( http://tinyurl.com/cruk-microarray)

A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor

This is the ensembldb development repository.

Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap

Computable build reports, package metadata, and download stats from the Bioconductor project

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

Regulatory networks with Direct Information in python

Compare different differential abundance and expression methods

A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

A proof of concept of RNAseq pipeline

PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

A proof of concept RNA-Seq pipeline with Nextflow

Exome/Capture/RNASeq Pipeline Implementation using snakemake

Analysing Capture Seq Count Data

Project Manager for NGS data analysis

viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data

hbctraining.github.io/intro-to-r-with-dge/

RNAseq pipeline centered on Salmon

Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.

A permissively licensed library designed to replace Illumina's Experiment Manager

Aligns short reads using dynamic seed size with strobemers

Command line utility for manipulating Illumina-generated FastQ files.

An accurate and ultra-fast hybrid genome assembler

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

No description or website provided.

A Snakemake workflow to process single samples or cohorts of paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.

MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers

Create file system symbolic links from low privileged user accounts within PowerShell