145 Open source projects that are alternatives of or similar to reveal

parallelized blat with multi-threads support

Deep neural network for the alignment of GC-MS peaks

Python package for extracting and analyzing image representations from state-of-the-art neural networks for computer vision

Viral genomics analysis pipelines

uLTRA is a long-read splice aligner with high accuracy from using a guiding annotation

Unveil Rs is a tool to create presentations from markdown inspired by reveal.js, mdbook and zola.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

dcHiC: Differential compartment analysis for Hi-C datasets

Displayed width of UTF-8 strings in Modern C++

Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

MTCNN implement by tensorflow. Easy to training and testing.

A custom layout object based on flow layout. Added supports for horizontal, vertical alignment and RTL direction of collection view items.(available for both UICollectionView and NSCollectionView)

Nanopore demultiplexing, QC and alignment pipeline

🔬 Assemble large genomes using short reads

Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria

GenomeTools genome analysis system.

Aligns short reads using dynamic seed size with strobemers

Genomic Data Retrieval with R

Facial Landmark Detection based on PyTorch

Official code repository for GATK versions 4 and up

The Modular Aligner and The Modular SV Caller

De novo annotation of young retrotransposons

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

🦄 An Artificial Inteligence to teach Google's Dinosaur to jump cactus

Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

Nanopore sequence read simulator

TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain

Whole Exome/Whole Genome Sequencing alignment pipeline

Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

Nightlight: Astronomic Image Processing

Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy

揭示效果布局，可以指定2个子布局，以圆形揭示效果切换选中状态

Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

Helpful components for aligning and keeping virtual objects aligned with the physical world.

Download and use genomes the easy way.

Flexible Algorithms for Image Registration

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

Needleman-Wunsch and Smith-Waterman algorithms in python

A genome browser that shows long reads and complex variants better

An efficient index for the colored, compacted, de Bruijn graph

Next generation sequencing reads de novo assembler.

A fast 23andMe DNA parser and inferrer for Python

Genome annotation with AUGUSTUS

Das Robert Koch-Institut stellt Systeme zur bundesweiten molekularen Surveillance des SRARS-CoV-2-Virus bereit. Jedes Labor in Deutschland, das SARS-CoV-2 sequenziert, ist laut der Verordnung zur molekulargenetischen Surveillance des Coronavirus SARS-CoV-2 verpflichtet, dem Robert Koch-Institut die Sequenz- und zugehörige Metadaten zu übermittel…

🌈Scaffold genome sequence assemblies using linked read sequencing data

Genome Interval Arithmetic in R

Using artificial intelligence and genetic algorithms to automatically write programs. Tutorial: http://www.primaryobjects.com/cms/article149

SuperPhy for the semantic web

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

Understand DNA structure and how machine learning can be used to work with DNA sequence data.

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

📦 [npm] Node CLI for reveal.js

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

Gfapy: a flexible and extensible software library for handling sequence graphs in Python

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

Workflow for Building Microsynteny Networks

Research on polio / protein folding.

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!