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flikaAn interactive image processing program for biologists written in Python.
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GPimGaussian processes and Bayesian optimization for images and hyperspectral data
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atomaiDeep and Machine Learning for Microscopy
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LLSpyLattice light-sheet post-processing utility.
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napari-aicsimageioMultiple file format reading directly into napari using pure Python
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cellfinderAutomated 3D cell detection and registration of whole-brain images
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OADCollection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
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ome-typesnative Python dataclasses for the OME data model
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graphsimR package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
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SESF-FuseSESF-Fuse: An Unsupervised Deep Model for Multi-Focus Image Fusion
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axondeepsegAxon/Myelin segmentation using Deep Learning
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camera-fusionMultiple cameras calibration and fusion with OpenCV Python.
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odemisOpen Delmic Microscope Software
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MiM NikonTiConfig and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.
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UnityImageSynthesisTutorial1Use Unity to generate synthetic images for deep learning image segmentation in PyTorch and fastai
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sparse-deconv-pyOfficial Python implementation of the 'Sparse deconvolution'-v0.3.0
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segmentationCode for my master's thesis. Instance segmentation of fluorescence microscopy images with deep learning.
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picassoA collection of tools for painting super-resolution images
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ImSwitchImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.
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brainregAutomated 3D brain registration with support for multiple species and atlases.
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starfm4pyThe STARFM fusion model for Python
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cucimNo description or website provided.
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ImfusionImage fusion using Discrete Wavelet Transformation
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LLVIPLLVIP: A Visible-infrared Paired Dataset for Low-light Vision
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MicroscPSF-PyFast and Accurate 3D PSF Computation for Fluorescence Microscopy
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ColiCoordsSingle-cell fluorescence microscopy data analysis
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DeconvolutionLab2Java (ImageJ/Fiji) software package for 3D deconvolution microscopy
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Imagefusion deepfuseImage fusion based on deepfuse network - Tensorflow (based on ICCV2017: deepfuse), Unofficial
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