267 Open source projects that are alternatives of or similar to smfsb

SBML differential equation and chemical reaction model (Gillespie simulations) for Julia's SciML ModelingToolkit

The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML support provided in a software package.

A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.

Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.

Tools to generate and study moment equations for any chemical reaction network using various moment closure approximations

An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

Latent Dirichlet Allocation

A web application to visualize and edit pathway models

Triton Model Analyzer is a CLI tool to help with better understanding of the compute and memory requirements of the Triton Inference Server models.

The Triton backend for the ONNX Runtime.

Material for a workshop on Bayesian stats with R

A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.

Exposes a serialized machine learning model through a HTTP API.

A C++ library of Markov Chain Monte Carlo (MCMC) methods

library of C++ functions that support applications of Stan in Pharmacometrics

This fork of BVLC/Caffe is dedicated to supporting Cambricon deep learning processor and improving performance of this deep learning framework when running on Machine Learning Unit(MLU).

This is a repository for a No-Code object detection inference API using the OpenVINO. It's supported on both Windows and Linux Operating systems.

Spark ML Lib serving library

This is a repository for a semantic segmentation inference API using the OpenVINO toolkit

Python MCMC Sampler

Python package for the creation, manipulation, and learning of Causal DAGs

Chainer implementation of Dense Fusion

Write fully type inferred Vuex modules

This code is used to build & run a Docker container for performing predictions against a Spark ML Pipeline.

Noisy network measurement with stan

🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)

PhyML -- Phylogenetic estimation using (Maximum) Likelihood

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

🏎️ Accelerate training and inference of 🤗 Transformers with easy to use hardware optimization tools

Deep learning based gaze estimation demo with a fun feature :-)

Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.

Fast Inference of Networks from Directed Regulations

Application of the L2HMC algorithm to simulations in lattice QCD.

An ICE-based predicate synthesizer for Horn clauses.

⚡ Open-source software for deep learning-based digital pathology

A multi-planet Radial Velocity and Transit modelling software

Tensorflow C++ examples for Visual Studio. Features Pose Estimation and various techniques to utilize the Tensorflow C++ interface

Observe workers as they pass in front of a camera to determine if they have adequate safety protection.

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

CmdStanR: the R interface to CmdStan

Create a concurrent video analysis pipeline featuring multistream face and human pose detection, vehicle attribute detection, and the ability to encode multiple videos to local storage in a single stream.

Implementing MCMC sampling from scratch in R for various Bayesian models

Pieces of code that have appeared on my blog with a focus on stochastic simulations.

python Parameter EStimation TOolbox

A prediction model for differential gene expression (DE) based on genome-wide regulatory interactions

Detect various irregularities of a product as it moves along a conveyor belt.

BAS R package https://merliseclyde.github.io/BAS/

A Unified Framework for Random Forest Prediction Error Estimation

Woodwork is a Python library that provides robust methods for managing and communicating data typing information.

Full Bayesian Inference for Hidden Markov Models

Sequential Monte Carlo algorithm for approximation of posterior distributions.

TypeDB: a strongly-typed database

An interactive web portal for exploring immuno-oncology data

This tutorial series provides step-by-step instructions for how to perform human pose estimation in Unity with the Barracuda inference library.

The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks

A scalable, high-performance serving system for federated learning models

Start with the Chempy tutorial

Examples for Bayesian inference using DynamicHMC.jl and related packages.

Workshop in omics integration and systems biology

C++ Helper Class for Deep Learning Inference Frameworks: TensorFlow Lite, TensorRT, OpenCV, OpenVINO, ncnn, MNN, SNPE, Arm NN, NNabla, ONNX Runtime, LibTorch, TensorFlow