140 Open source projects that are alternatives of or similar to SNPGenie

Pinpoints the mutation favored by selection

Learning the Variant Call Format

Powerful statistics for VCF files

Rare variant test software for next generation sequencing data

Spark VCF data source implementation for Dataframes

Utilities for analyzing next generation sequencing data.

Evolution simulator

Finds SNP sites from a multi-FASTA alignment file

Bayesian Evolutionary Analysis by Sampling Trees

Evolutionary Algorithms Framework

SpacePHARER CRISPR Spacer Phage-Host pAiRs findER

A fast multiple sequence alignment program.

Simulating complete lives of different cellular animals and plants. Evolution, inheritance, predation and more.

Syntax highlighting for computational biology

Data visualization tool for wikis evolution

Curated (meta)list of resources for Biology.

A simple simulation in Unity, which uses genetic algorithm to optimize forces applied to cubes

Backend is responsible to provide data to EVOlution App - iOS

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

Guided synteny alignment between duplicated genomes (within specified quota constraint)

Forward-time simulation in Python using fwdpp

A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)

FAVITES (FrAmework for VIral Transmission and Evolution Simulation)

Continuous Unix commit history from 1970 until today

Evolving version of Conway’s Game of Life.

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

SharpNEAT - Evolution of Neural Networks. A C# .NET Framework.

Code and data to create a git repository representing the Unix source code history

🔧 Simple script in python to convert CSV files to VCF

Gfapy: a flexible and extensible software library for handling sequence graphs in Python

A DNA Sequence Alignment/Map (SAM) library for Clojure

Helping humanity evolve

Project Manager for NGS data analysis

public repository for the "architecture improvement method reference"

Improve the quality of a denovo assembly by scaffolding and gap filling

An interesting display of evolution through neural networks and a genetic algorithm

Bayesian Evolutionary Analysis Sampling Trees

📊Evaluating, filtering, comparing, and visualising VCF

Solve multi-objective optimization problems with distributed evolutionary algorithms

Python package and CLI for whole-genome duplication related analyses

Trait-Driven Models of Ecology and Evolution 🌲

calcardbackup: moved to https://codeberg.org/BernieO/calcardbackup

The main repository for the development of the evolution game Thrive.

A fluent builder class for vCard files.

Space invaders, but the invaders evolve with genetic algorithm

simple viewer for variant call format using htslib

An interactive ecosystem and evolution simulator written in C and OpenGL, for GNU/Linux.

Microsatellite Instability (MSI) detection using high-throughput sequencing data.

Minor Variant Calling and Phasing Tools

DISHTINY: A Platform for Studying Open-Ended Evolutionary Transitions in Individuality

Archaeopteryx.js is a software tool for the visualization and analysis of highly annotated phylogenetic trees.

Configuration tutorials for a variety of mail user agents.

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.

A Framework for Coalescent Simulation in R

Tiny Genetic Programming in Python

Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format

vembrane filters VCF records using python expressions

convert 23andme or Ancestry.com raw genotype calls into VCF format, with dbSNP annotations

A phenotype-based tool for variant prioritization in WES and WGS data