2495 Open source projects that are alternatives of or similar to Ugene

Exome/Capture/RNASeq Pipeline Implementation using snakemake

List of IARC bioinformatics nextflow pipelines

A robust model for quantitative comparison of ChIP-Seq data sets.

SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)

An easy-to-use way for running Galaxy workflows.

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

Data and analysis for the Splatter paper

highly-efficient & lightweight mutation signature matrix aggregation

An NGS read trimming tool that is specific, sensitive, and speedy. (production)

SaffronTree: Reference free rapid phylogenetic tree construction from raw read data

Assembling the cause of phenotypes and genotypes from NGS data

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

Official git repository for Biopython (originally converted from CVS)

Snakemake-based workflow for detecting structural variants in WGS data

A fast 23andMe genome text file parser, now superseded by arv

RNASeq pipeline

NLP pipeline software using common workflow language

Antimicrobial Resistance Identification By Assembly

Use this Property Manager CLI to automate Akamai property changes and deployments across many environments.

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

An analysis and visualization platform for 'omics data

contains handy groovy workflow-libs scripts

Efficient pythonic random access to fasta subsequences

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

(No maintenance) Detect gene fusion directly from raw fastq files

A cross-platform shadowsocks GUI client

The OpenSource Disassembler

A DSL for data-driven computational pipelines

Tools to process and analyze deep sequencing data.

Workflow Description Language - Specification and Implementations

C library for high-throughput sequencing data formats

🍺🔬 Bioinformatics formulae for the Homebrew package manager (macOS and Linux)

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

Note-taking application, write down your thoughts.

Network utility for sending / receiving TCP, UDP, SSL

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

A cross-platform, efficient and practical CSV/TSV toolkit in Golang

A collection of publications on comparison of high-throughput sequencing technologies.

A python-based isomiR quantification and analysis pipeline

🌈Scaffold genome sequence assemblies using linked read sequencing data

🍴 Web applications made easy. Since 2011.

ATAC-seq peak-calling, QC and differential analysis pipeline

Pegasus Workflow Management System - Automate, recover, and debug scientific computations.

The IDE for competitive programming 🎉 | Fetch, Code, Compile, Run, Check, Submit 🚀

Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

Network file transfer application for Windows, OS X, & Linux

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

An interactive web tool for quality control of DNA sequencing data

Structural variant toolkit for VCFs

Otter Browser aims to recreate the best aspects of the classic Opera (12.x) UI using Qt5

ABRA2

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

Machine is a workflow/pipeline library for processing data

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

A library for generating an interactive SVG visualization of CWL workflows

FastQC port to Qt5: A quality control tool for high throughput sequence data.

An R-focused pipeline toolkit for reproducibility and high-performance computing

free software application for social network analysis and visualization

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

🔬 BEDOPS: high-performance genomic feature operations