398 Open source projects that are alternatives of or similar to variantkey

Ultrafast sequence typing and gene detection from NGS raw reads

Python and C++ code for reading and writing genomics data.

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

tools for working with genome variation graphs

programs and scripts, mainly python, for analyses related to nucleic or protein sequences

Official code repository for GATK versions 4 and up

A Java API for high-throughput sequencing data (HTS) formats.

(WIP) best-practices workflow for rare disease

Efficient pythonic random access to fasta subsequences

simple viewer for variant call format using htslib

Official git repository for Biopython (originally converted from CVS)

A curated list of awesome bioinformatics software.

A collection of scripts and notes related to genomics and bioinformatics

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

A package for designing compact and comprehensive capture probe sets.

A fast 23andMe genome text file parser, now superseded by arv

Analysis pipelines for sequencing data

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

A package for designing activity-informed nucleic acid diagnostics for viruses.

Data intensive science for everyone.

xHLA: Fast and accurate HLA typing from short read sequence data

Spark VCF data source implementation for Dataframes

A fast tool for hybrid genome assembly of long and short reads

Big Compute Learning Labs

CSGO Cheat Base for MacOSX. Written in C++ & Objective C. Menu Powered by ImGui. Includes Apple TouchBar API.

Multi-sample somatic variant caller

Python-based UCSC genome browser snapshot-taker and gallery-maker

Manhattan plot Generator

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

Examples to get started with IBM Functional Genomics Platform

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

simplified searching, fetching, and parsing records from NCBI using their E-utilities interface

A low-level toolkit to create floating elements. Tooltips, popovers, dropdowns, and more

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

A library for manipulating bioinformatics sequencing formats in Apache Spark

Analysing Capture Seq Count Data

CUT&RUN and CUT&Tag data processing and analysis

A phenotype-based tool for variant prioritization in WES and WGS data

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

🛠 React Component Developer Kit

Transcripts annotation and GO enrichment Fisher tests

My Software BASE

🤖 Module for unset any wrong HTML links (like rel="delete-form", rel="edit-form", etc.) from head on Drupal 8.x websites. This is trust way to grow up position in SERP Google, Yandex, etc.

Introduction to the Command Line for Genomics

Improve the quality of a denovo assembly by scaffolding and gap filling

Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria

Base is Baianat's design language, built based on the art of big typography and giving exactly the same experience on any device using responsive elements technique.

TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C

🚀 Jetrockets Standarts | ESLint

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

Forward-time simulation in Python using fwdpp

Traveling Salesman Problem Using Parallel Genetic Algorithms

📊Evaluating, filtering, comparing, and visualising VCF

Explore rearrangements and copy-number amplifications in a cancer genome

An orchestrator that eases out the implementation of page transitions

DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data

Bioconductor package for management of multi-assay data

Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates

Backend Server for CIViC Project