516 Open source projects that are alternatives of or similar to workflows

Nextflow basic tutorial for newbie users

minimal example implementations for bioinformatics workflow managers

A fast tool for hybrid genome assembly of long and short reads

Large genome reassembly based on Hi-C data, continuation of GRAAL

Temporal Java SDK

Alfred-Workflows，Vim，Script，Mac

funsies is a lightweight workflow engine 🔧

Repository for my tutorial course: Grunt.js Web Workflows on LinkedIn Learning and Lynda.com.

Workflow engine in C# .NET Core

Introduction to the Command Line for Genomics

Performs memory-efficient reservoir sampling on very large input files delimited by newlines

Spatial alignment of single cell transcriptomic data.

Big Compute Learning Labs

The GenePattern Server web application

📜 📒 Place for organization guidelines and workflows

Github action to retrieve branch or tag names with support for all events.

Add your recent activity to your profile readme!

Manhattan plot Generator

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data

Finite State Machine porting from Stateless C#

a pileup library that embraces the huge

Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.

TheEye Dockers and QuickStart

Contact map analysis for biomolecules; based on MDTraj

Genome Annotation Without Nightmares

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

A simple but powerful state machine implementation.

Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria

Phage-Host Interaction Search Tool

🍃 tool for expediting bazel build workflows

Primrose modeling framework for simple production models

Biopython Jupyter Notebook tutorial to characterize a small genome

Forward-time simulation in Python using fwdpp

simuG: a general-purpose genome simulator

Github action to retrieve all (added, copied, modified, deleted, renamed, type changed, unmerged, unknown) files and directories.

High-performance error correction for Illumina resequencing data

Genome-wide imputation pipeline

Bioinformatics curated workflows that use Biocontainers tools

Explore rearrangements and copy-number amplifications in a cancer genome

CLI for interacting with Cromwell servers

Easy genetic ancestry predictions in Python

Monitor computational workflows in real time

Python client for using Prefect Cloud with Saturn Cloud

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data

Distributed, workflow-driven integration environment

The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠

Python package and CLI for whole-genome duplication related analyses

Population assignment analysis using R

Polyaxon Core Client & CLI to streamline MLOps

programs and scripts, mainly python, for analyses related to nucleic or protein sequences

Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

A curated list of awesome things related to the Cadence and Temporal Workflow Engines

APIs for discovering genomics tools, their metadata and their containers

DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data

An easy-to-use way for running Galaxy workflows.

Find target sites for the miRNAs in genomic sequences

ntHash implementation in Rust

A tool for fast and accurate summarizing of variant calling format (VCF) files