Top 16 hi-c open source projects

Server component for HiGlass that manages and serves tiled data

Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

A versatile tool to perform pile-up analysis on Hi-C data in .cool format.

Builds a docker container wrapping higlass-server and higlass-client in nginx

Adjacency-constrained hierarchical clustering of a similarity matrix

Genome Contact Map Explorer - gcMapExplorer. Visit:

Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.

A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains

dcHiC: Differential compartment analysis for Hi-C datasets

Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation

TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C

Docker for 4DN Hi-C processing pipeline

Large genome reassembly based on Hi-C data, continuation of GRAAL

A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.

A 3D genome data processing tutorial for ISMB/ECCB 2017

Analysis of Chromosome Conformation Capture data (Hi-C)